View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10163A_high_39 (Length: 220)
Name: NF10163A_high_39
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_high_39 |
 | |
|
| [»] chr6 (10 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 26975725 - 26975527
Alignment:
| Q |
22 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| |
|
|
| T |
26975725 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagtagtgagttcacttttaatattcgag |
26975626 |
T |
|
| Q |
122 |
atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatatt |
220 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26975625 |
atttgagtccaacaaggtaatcagcaacatgtaaaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcatatt |
26975527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 26 - 220
Target Start/End: Complemental strand, 26636416 - 26636222
Alignment:
| Q |
26 |
ttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt |
125 |
Q |
| |
|
||||||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26636416 |
ttgtcttgcccattccttcggttccaaggattcctattatgcagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt |
26636317 |
T |
|
| Q |
126 |
gagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatatt |
220 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26636316 |
gagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcatatt |
26636222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 26 - 220
Target Start/End: Complemental strand, 26742382 - 26742188
Alignment:
| Q |
26 |
ttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt |
125 |
Q |
| |
|
||||||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26742382 |
ttgtcttgcccattccttcggttccaaggattcctattatgcagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt |
26742283 |
T |
|
| Q |
126 |
gagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatatt |
220 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26742282 |
gagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcatatt |
26742188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 26950517 - 26950319
Alignment:
| Q |
22 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag |
121 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| | || ||||| ||| |||||| ||||||||||||||||||| |
|
|
| T |
26950517 |
agtgttgtctttcccattcccccagttccaaggattcctatcatgcagactccatcgtttgatcccaactctgaaagtgaattcacttctgatattcgag |
26950418 |
T |
|
| Q |
122 |
atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatatt |
220 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26950417 |
atttgagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatatt |
26950319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 26959900 - 26959704
Alignment:
| Q |
22 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag |
121 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||| ||| |||||||||| | || ||||| ||| |||||| ||||||| ||||||||||| |
|
|
| T |
26959900 |
agtgttgtctttcccattcctccagttccaaggattcctatcatgcagactccatcgtttgatcccaactctgaaagtgaattcacttttgatattcgag |
26959801 |
T |
|
| Q |
122 |
atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcata |
218 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26959800 |
atttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacgtctgtaactattttttcaataaaatcacgttcata |
26959704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 27664613 - 27664797
Alignment:
| Q |
22 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag |
121 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27664613 |
agtgttgtcttacccagacctccagttccaaggattcctattatgtagactccatcggtacatcccaagtctagaagtgaattcacttctgatattcgag |
27664712 |
T |
|
| Q |
122 |
atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaa |
206 |
Q |
| |
|
||| ||||||||| ||||| ||||||||||||| | || |||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
27664713 |
attcgagtccaacaaggtactcagcaacatgtaaatgacaacggttgatcttgttggagacgtctgtaactatttcttcaataaa |
27664797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 26849486 - 26849288
Alignment:
| Q |
22 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag |
121 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||||||||||| | ||||||||||| |||| |||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
26849486 |
agtgttgtttttcccattcctccagttccaaggattcctattttccagactccatcattagattccaattctagaagtgaattcacttctgatattcgag |
26849387 |
T |
|
| Q |
122 |
atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatatt |
220 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| | |||||| ||||||||||||| |||||| || |||||||||| ||||||||| | ||||||||| |
|
|
| T |
26849386 |
atttaagtccaacaaggtaatcagcaacatgcaaaggaacatggttgatcttgttggagacatccttaactattttcccaataaaatggtgttcatatt |
26849288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 25 - 220
Target Start/End: Complemental strand, 25074638 - 25074446
Alignment:
| Q |
25 |
gttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatt |
124 |
Q |
| |
|
|||||||| |||||||| |||||||||| ||||||||||||| | ||||||| || | ||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
25074638 |
gttgtcttgcccattccaccagttccaacgattcctattatgcatactccat---tatatcccaagtctagaagtgaattcacttctgaaattcgagatc |
25074542 |
T |
|
| Q |
125 |
tgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatatt |
220 |
Q |
| |
|
|| ||||| |||||||||| |||||||| ||||| ||||| ||||||| |||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
25074541 |
gaagaccaacaaggtaatcagtaacatgtaaaggaatttggttaatcttgttggagacgtctctaactattttttcaataaaatcacgttcatatt |
25074446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 115 - 220
Target Start/End: Complemental strand, 31288986 - 31288881
Alignment:
| Q |
115 |
attcgagatttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgtt |
214 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||| |||||| ||||| ||||||| |||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
31288986 |
attcgagatttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacatctgtaactattttttcaataaaatctcgtt |
31288887 |
T |
|
| Q |
215 |
catatt |
220 |
Q |
| |
|
|||||| |
|
|
| T |
31288886 |
catatt |
31288881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 31289042 - 31288986
Alignment:
| Q |
22 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatca |
78 |
Q |
| |
|
|||||||| |||||| |||| ||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
31289042 |
agtgttgttttaccccttcctccagttccaagtattcctattatgcagactccatca |
31288986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 25 - 220
Target Start/End: Original strand, 17992626 - 17992821
Alignment:
| Q |
25 |
gttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatt |
124 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||||||||||| |||| |||||| || | |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17992626 |
gttgtcttgcccattccaccagtaccaaggattcctattatgcagacaccatcattatattccaagtctagaagtgaattcacttctgatattcgagatt |
17992725 |
T |
|
| Q |
125 |
tgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatatt |
220 |
Q |
| |
|
|||| |||| |||||||| |||||||||| ||||||||||| ||||||| ||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17992726 |
tgagaccaataaggtaatcggcaacatgtaatggaacgtggttaatcttgttggaagtgtctgtaactattttttcaataaaatcacgttcatatt |
17992821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University