View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10163A_high_7 (Length: 464)
Name: NF10163A_high_7
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 22 - 450
Target Start/End: Complemental strand, 39433290 - 39432861
Alignment:
| Q |
22 |
gttttttaactgataaattagtgatcaaccagctatttataaacttgtgtcttaagaaacaatatttcatgaaaagaaacatcattttattctcttttaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39433290 |
gttttttaactgataaattagtgatcaaccagctatttataaacttgtgtcttaagaaacaatatttcatgaaaagaaacatcattttattctcttttaa |
39433191 |
T |
|
| Q |
122 |
aattatgctattaacaagagccaccttattaataaaaagtgactttaaagtctcaaatgacagagttaaacaatatagaacaaccaaacctattgatttt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39433190 |
aattatgctattaacaagagccaccttattaataaaaagtgactttaaagtctcaaatgacagagttaaacaatatagaacaaccaaacctattgatttt |
39433091 |
T |
|
| Q |
222 |
ccaatgtaattaattttattatatatgcatatattcttcc-gaaccatctcatatataattgagttcttttagtgttgggagaattcaacatgtctggga |
320 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39433090 |
ccaatgtaattaattttattatatgtgcatatattcttccagaaccatctcatatataattgagttcttttagtgttgggagaattcaacatgtctggga |
39432991 |
T |
|
| Q |
321 |
tgaaaataattgaaaatcctgcatgtgaccttttgagtttgttggtatttatatagtgtttatggtatatcttactactttatgaagtgggagctcgatc |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39432990 |
tgaaaataattgaaaatcctgcatgtgaccttttgagtttgttggtatttatatagtgtttatagtatatcttactactttatgaagtgggagctcgatc |
39432891 |
T |
|
| Q |
421 |
gtgaactcaaaggcataaactgatgtccat |
450 |
Q |
| |
|
|||||||||||||||||||| |||||||| |
|
|
| T |
39432890 |
gtgaactcaaaggcataaacctatgtccat |
39432861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University