View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10163A_low_1 (Length: 673)
Name: NF10163A_low_1
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 248 - 634
Target Start/End: Original strand, 38059773 - 38060172
Alignment:
| Q |
248 |
tttgcttggaatctagatgtcaataataatgctttctatgctgaattgatgggtgttatgctagaaattgagtttgctcacaaaaaatgttgacattgtc |
347 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38059773 |
tttgcttgcaatctagatgtcaata---atgctttctatgctgaattggtgggtgttatgctagcaattgagtttgctcacaaaaaatgttgacattgtc |
38059869 |
T |
|
| Q |
348 |
tgtggattgaaacatgcttataattggtgactatgacctacaaatctcgctctttagttccttggaacttaagaaacagttggctcaattgtatgactat |
447 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| || ||| ||||| |
|
|
| T |
38059870 |
tgtggattgaaacatacttacaattggtgactatggccttcaaatctcgctctatagttccttggaacttaagaaacagttggctcatttatatcactat |
38059969 |
T |
|
| Q |
448 |
tactagtagtacgcaatttattatatctcacaattttagagaagttaatcaatgtgctaataggcttaccaatcttggcctgcaaatggacattcatcat |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||| | |||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
38059970 |
tactagtagtacgcaatttattatatctcacaatttcagagaagtaaatcaatgtgttgataggcttgccaatcttggcctgcaaatggacatttatcat |
38060069 |
T |
|
| Q |
548 |
cggtgggat----------------tttttaatgctttcataaaaaatagattgagtttacctgaatatagattttgttagcctattgatgtttgatcat |
631 |
Q |
| |
|
|| |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | |
|
|
| T |
38060070 |
cgatgggatagcattcctccgactattttaaatgctttcataagaaatagattgagtttacctgaatatagattttgttagtctattgctgtttgatcgt |
38060169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 38059477 - 38059565
Alignment:
| Q |
12 |
atgaacagagtataccttctt--atgtgttcaagggacacagagaaatccttggagcagataaggtcataatagaataatgcaatatgc |
98 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38059477 |
atgaacagagtataccttctctcatgtgttcaagggacataaagaaatccttgtagcagataaggtcataatagaataatgcaatatgc |
38059565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 630
Target Start/End: Complemental strand, 51381623 - 51381550
Alignment:
| Q |
557 |
tttttaatgctttcataaaaaatagattgagtttacctgaatatagattttgttagcctattgatgtttgatca |
630 |
Q |
| |
|
|||| |||| |||||| |||||||||| ||||||| | ||||||||| || ||||| |||||||||||||||| |
|
|
| T |
51381623 |
ttttgaatgatttcattaaaaatagatcgagtttatccaaatatagatgtttttagcttattgatgtttgatca |
51381550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 38060977 - 38060889
Alignment:
| Q |
12 |
atgaacagagtataccttcttatgtgttcaagggacacag--agaaatccttggagcagataaggtcataatagaataatgcaatatgc |
98 |
Q |
| |
|
||||||| ||||||||||| || ||| |||||||||||| |||| |||||| |||| |||| |||||||||| ||||| ||||||| |
|
|
| T |
38060977 |
atgaacaaagtataccttcacatttgtccaagggacacagatagaattccttgaagcatctaagttcataatagagtaatgtaatatgc |
38060889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 39243317 - 39243393
Alignment:
| Q |
271 |
taataatgctttctatgctgaattgatgggtgttatgctagaaattgagtttgctcacaaaaaatgttgacattgtct |
348 |
Q |
| |
|
||||||||||| |||||| | ||||||||||||||||||| |||||| |||||||||||||| |||| |||||||| |
|
|
| T |
39243317 |
taataatgcttcctatgcccagttgatgggtgttatgctagcaattgacattgctcacaaaaaa-gttggcattgtct |
39243393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University