View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_10 (Length: 481)
Name: NF10163A_low_10
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 7 - 377
Target Start/End: Original strand, 46481250 - 46481620
Alignment:
| Q |
7 |
ggaatgagtcaatctttgagggcgtggagcaaaacatttcatatagaatgtttagaagacatgaaagacatcatgttgtaatgaataaggttggttttcg |
106 |
Q |
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| T |
46481250 |
ggaatgagtcaatctttgagggcgtggagcaaaacatttcatatagaatgtttagaagacatgaaagacatcatgttgtaatgaataaggttggttttcg |
46481349 |
T |
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| Q |
107 |
gcagttgtatgtgattagtgtttcggaatgtactgttatccttattttaagctacatatttagattgtttttcaatcacaattgcatgaaacaatagtat |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46481350 |
gcagttgtatgtgattagtgtttcggaatgtactgttatccttattttaagctacatatttagattgtttttcaatcacaattgcatgaaacaatggtat |
46481449 |
T |
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| Q |
207 |
attttgaatttaaacaggttttgttccaggaatggcaaggaaatcccctgattatccttatcttcagacccagtctcgtatcatttttgagacaatgcac |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
46481450 |
attttgaatttaaacaggttttgttccaggaatggcaaggaaatcccctgattatccatatcttcaaacccagtctcgtatcatttttgagacaatgcac |
46481549 |
T |
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| Q |
307 |
aatcttgcagcaatatattttctccatctataaaggttgcctaagaggaccttagcaatcatccttccttg |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46481550 |
aatcttgcagcaatatattttctccatctataaaggttgcctaagaggaccttagcaatcatccttccttg |
46481620 |
T |
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