View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_102 (Length: 274)
Name: NF10163A_low_102
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_102 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 139 - 264
Target Start/End: Complemental strand, 9215544 - 9215419
Alignment:
| Q |
139 |
ctcacaagaaacataagtttagtttcttttttgagaaaattcttgaaccacaatgcagagggtttctcgtatcttttcaaaccattcttgtaatctacaa |
238 |
Q |
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| T |
9215544 |
ctcacaagaaacataagtttagtttcttttttgagaaaattcttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatccacaa |
9215445 |
T |
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| Q |
239 |
aggtcattccaaatctcacagaataa |
264 |
Q |
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| T |
9215444 |
atgtcattccaaatctcacagaataa |
9215419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 9215677 - 9215614
Alignment:
| Q |
6 |
agatcagtatatctacacatccatgtttcactcccttttcggttgaataggacctctttagaac |
69 |
Q |
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| T |
9215677 |
agatcagtatatctacacatccatgtttcattccctttttggttgaataggacctctttagaac |
9215614 |
T |
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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 145 - 254
Target Start/End: Original strand, 25158812 - 25158921
Alignment:
| Q |
145 |
agaaacataagtttagtttcttttttgagaaaattcttgaaccacaatgcagagggtttctcgtatcttttcaaaccattcttgtaatctacaaaggtca |
244 |
Q |
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| T |
25158812 |
agaaacataagcttagtttcttttttgagaaaattcttaaaccacaatgcagacaacttctggtatcttttcaagccattcttataatcaacaaaggtca |
25158911 |
T |
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| Q |
245 |
ttccaaatct |
254 |
Q |
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| T |
25158912 |
ttccaaatct |
25158921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 264
Target Start/End: Complemental strand, 25254006 - 25253914
Alignment:
| Q |
172 |
agaaaattcttgaaccacaatgcagagggtttctcgtatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcacagaataa |
264 |
Q |
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| T |
25254006 |
agaaaattcttgaaccacaaccctgagagcttttgatatcttttcaaaccatttttgtaatctacaaaggtcattccaaatctcacagtataa |
25253914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 264
Target Start/End: Original strand, 25167300 - 25167393
Alignment:
| Q |
171 |
gagaaaattcttgaaccacaatgcagagggtttctcgtatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcacagaataa |
264 |
Q |
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| T |
25167300 |
gagaaaattctggaaccacaatcccgagagcttttgatatcttttcaaaccatttttgtaatctacgaatgtcattccaaatctcacagtataa |
25167393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 264
Target Start/End: Original strand, 25179001 - 25179095
Alignment:
| Q |
170 |
tgagaaaattcttgaaccacaatgcagagggtttctcgtatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcacagaataa |
264 |
Q |
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| T |
25179001 |
tgagaaaattcttgaaccacaatcctgaaagcttttgatatcttttcaaaccatctttgtaatctataaaagtcattccaaatctcacagtataa |
25179095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 30363156 - 30363107
Alignment:
| Q |
208 |
tatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcac |
257 |
Q |
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| T |
30363156 |
tatcttttcaagtcattgttgtaatctacaaagttcattccaaacctcac |
30363107 |
T |
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