View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_108 (Length: 267)
Name: NF10163A_low_108
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_108 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 7 - 261
Target Start/End: Complemental strand, 31652340 - 31652086
Alignment:
| Q |
7 |
tttggtgttaggtgatcttctaaagttagaatcactggaaaatcagatttgacaaaagcatattcttttatggcttccaaacatttggttagtgcaactg |
106 |
Q |
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| T |
31652340 |
tttggtgttaggtgatcttctaaagttagaatcactggaaaatcagatttgacaaaagcatattcttttatggcttccaaacatttggttagtgcaactg |
31652241 |
T |
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| Q |
107 |
gagtggtgagagtcctgcattgatttcaagaagtaagaccataagatacaagaaaacaatcatccaactttatggtgcattatatttttctagcggtcta |
206 |
Q |
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| T |
31652240 |
gagtggtgagagtcctgcattgatttcaagaagtaagaccataagatacaagaaaacaatcatccaactttatggtgcattatatttttctagcggtcta |
31652141 |
T |
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| Q |
207 |
atagtacatactttccatgaactactttaatgccaccatctttagttgaagatgg |
261 |
Q |
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| T |
31652140 |
atagtacatactttccatgaactactttaatgccaccatctttagttgaagatgg |
31652086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 7 - 261
Target Start/End: Complemental strand, 31702569 - 31702315
Alignment:
| Q |
7 |
tttggtgttaggtgatcttctaaagttagaatcactggaaaatcagatttgacaaaagcatattcttttatggcttccaaacatttggttagtgcaactg |
106 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31702569 |
tttggtgttaggtggtcttctaaagttagaatcactggaaaatcagatttaacaaaagcatattcttttatggcttccaaacatttggttagtgcaactg |
31702470 |
T |
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| Q |
107 |
gagtggtgagagtcctgcattgatttcaagaagtaagaccataagatacaagaaaacaatcatccaactttatggtgcattatatttttctagcggtcta |
206 |
Q |
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| T |
31702469 |
gagtggtgagagtcctgcattgatttcaagaattaagaccataagatacaagaaaacaatcatccaactttatggtgcattatatttttctagcggtcta |
31702370 |
T |
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| Q |
207 |
atagtacatactttccatgaactactttaatgccaccatctttagttgaagatgg |
261 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31702369 |
atagtacatactttccatgaactactttaataccaccatctttagttgaagatgg |
31702315 |
T |
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