View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_109 (Length: 266)
Name: NF10163A_low_109
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_109 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 261
Target Start/End: Original strand, 41704904 - 41705158
Alignment:
| Q |
7 |
gaagaccacttgcacactcaagtgctcgatttgtgtcaacatgacctgaattttccaagtaacggtgacaaatactagaggaagagcagttaagaggaga |
106 |
Q |
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| T |
41704904 |
gaagaccacttgcacactcaagtgctcgatttgtgtcaacttgacctgaattttccaagtaacggtgacaaatactagaggaagagcagttaagaggaga |
41705003 |
T |
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| Q |
107 |
aaccaagagacgaggggaacagttgaaaatgaacactgtgttggatgaagttatgttgaaaggaagtgactgatttaaccaaataccattgcttaccggc |
206 |
Q |
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| T |
41705004 |
aaccaagagacgaggggaacagttgaaaatgaacactgtgttggatgaagttatgttgaaaggaagtgactgatttaaccaaataccattgcttaccggc |
41705103 |
T |
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| Q |
207 |
atgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaacaccatac |
261 |
Q |
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| T |
41705104 |
atgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaacaccatac |
41705158 |
T |
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Back To:
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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 177 - 259
Target Start/End: Original strand, 1453265 - 1453347
Alignment:
| Q |
177 |
tgatttaaccaaataccattgcttaccggcatgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaacaccat |
259 |
Q |
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| T |
1453265 |
tgatttaagtaaatatcattgcttaccaacatgccttgtgtgacacatgaaccaggtaaccaaggttgtggctgcaccaccat |
1453347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 177 - 259
Target Start/End: Original strand, 1464957 - 1465039
Alignment:
| Q |
177 |
tgatttaaccaaataccattgcttaccggcatgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaacaccat |
259 |
Q |
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| T |
1464957 |
tgatttaagtaaatatcattgcttaccaacatgccttgtgtgacacatgaaccaggtaaccaaggttgtggctgcaccaccat |
1465039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 7564110 - 7564146
Alignment:
| Q |
204 |
ggcatgtcttgtgtgacacatgaaccgggtaaccaag |
240 |
Q |
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| T |
7564110 |
ggcatgtcttgtgtaacacatgaaccaggtaaccaag |
7564146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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