View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_115 (Length: 259)
Name: NF10163A_low_115
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_115 |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 4365437 - 4365314
Alignment:
| Q |
3 |
tattctatatatagttttatgttttatacctttctataaggtattgaatgatagatatgattgtctaaatgtaaattctatgtgaatttggacggctttg |
102 |
Q |
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| T |
4365437 |
tattctatatatagttttatgttttatacctttctataaggtattcaatgatagatatgattgtctaaatgtaaattctatgtgaatttggacggctttg |
4365338 |
T |
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| Q |
103 |
tccttttatgtattgaattgtata |
126 |
Q |
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| T |
4365337 |
tccttttatgtattgaattatata |
4365314 |
T |
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Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 33652296 - 33652146
Alignment:
| Q |
66 |
tctaaatgtaaattctatgtgaatttggacggct-----ttgtccttttatgtattgaattgtataagctatattagtgaaatgttaaagtttattagtt |
160 |
Q |
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||||||| |||||||||||||||||| || ||| ||||||||||| |||| |||||||||||| | || |||||| |||||| ||||||||| |
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| T |
33652296 |
tctaaatataaattctatgtgaatttagaatgctttgtcttgtccttttaagtatcgaattgtataagttcatgtaatgaaatattaaaggttattagtt |
33652197 |
T |
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| Q |
161 |
gaaattgaggattaaaggcataccttgcatatgaatgtttcttatgtatat |
211 |
Q |
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| T |
33652196 |
gaaattgaggattaaagacataccttgcgtatgaatgtttcttatgtatat |
33652146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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