View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_119 (Length: 256)
Name: NF10163A_low_119
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_119 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 76 - 247
Target Start/End: Original strand, 3742077 - 3742248
Alignment:
| Q |
76 |
ttgggagttagagtattggccacacagaatgacatatgaagaaattgaagcttccacaaaaggtttctctgagaaaaatgtgattggtgttggagggaat |
175 |
Q |
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| T |
3742077 |
ttgggagttagagtattggccacacagaatgacatatgaagaaattgaagcttccacaaaaggtttctctgagaaaaatgtgattggtgttggagggaat |
3742176 |
T |
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| Q |
176 |
gggaaagtctataagggtgttttaagaggaggagtagtgattgctgtgaaacacatttctcatgagaataat |
247 |
Q |
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| T |
3742177 |
gggaaagtctataagggtgttttaagaggaggagtagtgattgctgtgaaacacatttctcatgagaataat |
3742248 |
T |
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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 3742002 - 3742033
Alignment:
| Q |
1 |
tgttttggttttgttggtactgtttttgattc |
32 |
Q |
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| T |
3742002 |
tgttttggttttgttggtactgtttttgattc |
3742033 |
T |
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