View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10163A_low_12 (Length: 447)
Name: NF10163A_low_12
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_12 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 10 - 426
Target Start/End: Complemental strand, 43561575 - 43561159
Alignment:
| Q |
10 |
attatactctctataaacctaaacatatctctttttgtatccaccataccttgaacatatatctccttttccgtgcctgctgcaacacccacaaatttca |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43561575 |
attacactctctataaacctaaacatatctctctttgtatccaccgtaccttgaacatatatctccttttccgtgcctgctgcaacacccacaaatttca |
43561476 |
T |
|
| Q |
110 |
atttcaatcaatggctttcaacttctcctccaatcttgaacgccacatgtatgaaaatgggattgatttgcttggatttacggttgaacaggcaatgaac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
43561475 |
atttcaatcaatggctttcaacttctcctccaatcttgaacgccacatgtatgaaaatgggattgatttgcttggatttacggttgaacaggcagtgaac |
43561376 |
T |
|
| Q |
210 |
attgcaaatttcatttcgatagactatcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttcttccgcttttgtgcat |
309 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
43561375 |
attgcaaatttcatttcgataaactatcacaacagacgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccatttcttctgcttttgtgcat |
43561276 |
T |
|
| Q |
310 |
actggtatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagattttacaattgattggaaa |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43561275 |
actggtatctttataaattgttggagctattagctcacaacactccattctcggttgttgatgaaagtctagcatttgagattttacaattgattggaaa |
43561176 |
T |
|
| Q |
410 |
tctcaaatggttttttg |
426 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
43561175 |
tctcaaatggttttttg |
43561159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 104 - 426
Target Start/End: Original strand, 17729679 - 17730001
Alignment:
| Q |
104 |
atttcaatttcaatcaatggctttcaacttctcctccaatcttgaacgccacatgtatgaaaatgggattgatttgcttggatttacggttgaacaggca |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||| ||||||||| ||| |
|
|
| T |
17729679 |
atttcaatttcaatcaatggctttcaacttctcctccaatcttgaacgtcacatgtatgaaaacagaattgatttgcttgggtttaaggttgaacaagca |
17729778 |
T |
|
| Q |
204 |
atgaacattgcaaatttcatttcgatagactatcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttcttccgctttt |
303 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||||| | |||| |
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|
| T |
17729779 |
atgaacattgccaatttcatttcgatagactatcacaacaggcgttttcgttgtggatttgttttgcgaaatgattgtttaacccgtttcttctgttttt |
17729878 |
T |
|
| Q |
304 |
gtgcatactggtatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagattttacaattgat |
403 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
17729879 |
gtgcatactggtatctttataaattgctggagctattagctcacaatactccattctcggttgttgatgaaagcctagcatttgagattttacaattgat |
17729978 |
T |
|
| Q |
404 |
tggaaatctcaaatggttttttg |
426 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
17729979 |
tggaaatctcaaatgattttttg |
17730001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 426
Target Start/End: Complemental strand, 43569419 - 43569380
Alignment:
| Q |
387 |
gagattttacaattgattggaaatctcaaatggttttttg |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43569419 |
gagattttacaattgattggaaatctcaaatggttttttg |
43569380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 8e-99; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 115 - 425
Target Start/End: Complemental strand, 1602139 - 1601831
Alignment:
| Q |
115 |
aatcaatggctttcaacttctcctccaatcttgaacgccacatgtatgaaaatgggattgatttgcttggatttacggttgaacaggcaatgaacattgc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1602139 |
aatcaatggctttcaacttctcctccaatcttgaacgccaaatacatgaaaataggattgatttgcttggatttacggttgaacagacaatgaacattgc |
1602040 |
T |
|
| Q |
215 |
aaatttcatttcgatagactatcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttcttccgcttttgtgcatactgg |
314 |
Q |
| |
|
|||||||||||||||||||||||| | |||| ||||| ||||||||||||| | |||||||||| ||||| ||||||| || |||| |||||| ||| |
|
|
| T |
1602039 |
caatttcatttcgatagactatcacgacaggcatcttcattgtggatttgtc-tacaaaatgattacttaacttgtttctt-cgattttctgcatattgg |
1601942 |
T |
|
| Q |
315 |
tatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagattttacaattgattggaaatctca |
414 |
Q |
| |
|
||||||||||||||| | ||||||||||| ||| | |||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1601941 |
tatctttataaattgcttgagctattagctcacgatactccattctcggttgttattgaaaatctagcgtttgagattttacaattgattggaaatctca |
1601842 |
T |
|
| Q |
415 |
aatggtttttt |
425 |
Q |
| |
|
|||||| |||| |
|
|
| T |
1601841 |
aatggtgtttt |
1601831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 63 - 420
Target Start/End: Complemental strand, 1622646 - 1622290
Alignment:
| Q |
63 |
aacatatatctccttttccgtgcctgctgcaacacccacaaatttcaatttcaa-tcaatggctttcaacttctcctccaatcttgaacgccacatgtat |
161 |
Q |
| |
|
|||||||||||| ||||| |||| || |||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
1622646 |
aacatatatctctctttccctgccagccacaacacccttggatttcattttcaaatcaatggctttcaacttctcctccaatcttgaacgccaaatacat |
1622547 |
T |
|
| Q |
162 |
gaaaatgggattgatttgcttggatttacggttgaacaggcaatgaacattgcaaatttcatttcgatagactatcacaagaggcgtcttcgttgtggat |
261 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| | | ||||||||||||||||| |
|
|
| T |
1622546 |
gagaacataattgatttgcttggatttacggttgaacagacaatgaacattgccaatttcatttcgatagactatcacgacaagcgtcttcgttgtggat |
1622447 |
T |
|
| Q |
262 |
ttgtcttgcaaaatgattgtttaacccgtttcttccgcttttgtgcatactggtatctttataaattgttggagctattagcgcacaacactccattctc |
361 |
Q |
| |
|
||||| | |||||||||| |||||||||||||| || |||| |||||| ||||||||||||||||||||| | ||||||| ||||| ||||||||||| |
|
|
| T |
1622446 |
ttgtc-tacaaaatgattacttaacccgtttctt-cgattttttgcatattggtatctttataaattgttgcaattattagctcacaatactccattctc |
1622349 |
T |
|
| Q |
362 |
ggttgttgatgaaagtctagcatttgagattttacaattgattggaaatctcaaatggt |
420 |
Q |
| |
|
|| |||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1622348 |
ggatgttattgaaaatctagcgtttgagattttacaattgattggaaatctcaaatggt |
1622290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 95 - 426
Target Start/End: Original strand, 1601018 - 1601349
Alignment:
| Q |
95 |
cacccacaaatttcaatttcaa-tcaatggctttcaacttctcctccaatcttgaacgccacatgtatgaaaatgggattgatttgcttggatttacggt |
193 |
Q |
| |
|
||||| ||| ||||| |||||| ||||||| |||||| || ||||||||| ||||| |||| ||||||||||| || |||||||||||||| |||| ||| |
|
|
| T |
1601018 |
caccctcaattttcattttcaaatcaatggttttcaaattatcctccaattttgaatgccatatgtatgaaaacggaattgatttgcttgg-tttatggt |
1601116 |
T |
|
| Q |
194 |
tgaacaggcaatgaacattgcaaatttcatttcgatagactatcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttc |
293 |
Q |
| |
|
||||||| ||||| | ||||| ||||||||||||| ||| ||| |||| | |||| ||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1601117 |
tgaacagacaatgcatattgccaatttcatttcgaaagaatattacaacatgcgtattcattgtggatttgtcttgcgaaatgattgtttaacccgtttc |
1601216 |
T |
|
| Q |
294 |
ttccgcttttgtgcatactggtatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagattt |
393 |
Q |
| |
|
||| | |||| ||||||| ||||||| |||||||| ||||||||||||| ||| | |||||||| || | | || ||||| | ||| |||||||||| |
|
|
| T |
1601217 |
ttctgtttttctgcatacaggtatctctataaatttctggagctattagctcacgatactccattatcaggttttattgaaaatatagagtttgagattt |
1601316 |
T |
|
| Q |
394 |
tacaattgattggaaatctcaaatggttttttg |
426 |
Q |
| |
|
||||||||| ||||||||||||| ||| ||||| |
|
|
| T |
1601317 |
tacaattgaatggaaatctcaaacggtgttttg |
1601349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 95 - 426
Target Start/End: Original strand, 1621501 - 1621827
Alignment:
| Q |
95 |
cacccacaaatttcaatttcaa-tcaatggctttcaacttctcctccaatcttgaacgccacatgtatgaaaatgggattgatttgcttggatttacggt |
193 |
Q |
| |
|
||||| ||| ||||| |||||| | ||||| ||||||||| ||||||||| ||||| |||| ||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
1621501 |
caccctcaattttcattttcaaataaatggttttcaacttatcctccaattttgaatgccatatgtatgaaaacggaattgatttgcttgg-tttacggt |
1621599 |
T |
|
| Q |
194 |
tgaacaggcaatgaacattgcaaatttcatttcgatagactatcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaaccc-gttt |
292 |
Q |
| |
|
|||||| |||||||| ||||| |||||||||| || ||| ||| |||| | |||||||| ||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
1621600 |
tgaacaagcaatgaatattgccaatttcattttgaaagaatattacaacatgcgtcttcattgtggatttgtcttgcggaatgattgtttaacccatttt |
1621699 |
T |
|
| Q |
293 |
cttccgcttttgtgcatactggtatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagatt |
392 |
Q |
| |
|
|| | |||| ||||||| |||||| |||||||| | ||||||||||| ||||| || |||| |||||| ||||| |||| ||||||||| |
|
|
| T |
1621700 |
tttttgtttttctgcatacaagtatctctataaatt-tctgagctattagctcacaatac-----tctcagttgttattgaaaatctaaagtttgagatt |
1621793 |
T |
|
| Q |
393 |
ttacaattgattggaaatctcaaatggttttttg |
426 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||| |
|
|
| T |
1621794 |
ttacaattgattggaaatctcagatggtgttttg |
1621827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 115 - 418
Target Start/End: Original strand, 29543279 - 29543585
Alignment:
| Q |
115 |
aatcaatggctttcaacttctcctccaatcttgaacgccacatgtatgaaaatgggattgatttgcttggatttacggttgaacaggcaatgaacattgc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||| ||||||||||| | ||||||||||| | || |||||||||| |||||||||||||| |
|
|
| T |
29543279 |
aatcaatggctttcaacttctcctccaaacttgaatgccagatgtatgaaaacagaattgatttgctacgtttcgcggttgaacaagcaatgaacattgc |
29543378 |
T |
|
| Q |
215 |
aaatttcatttcgatagactatcacaagag----gcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttcttccgcttttgtgcata |
310 |
Q |
| |
|
|||||||| || ||| ||||||| || || |||||| ||||||||| | |||||| |||||||||||||| ||| |||| | || | |||| |
|
|
| T |
29543379 |
caatttcatctctatatactatcataatagacgtacgtctttgttgtggatatatcttgc-gaatgattgtttaacatgttgcttctgtttctcaacata |
29543477 |
T |
|
| Q |
311 |
ctggtatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagattttacaattgattggaaat |
410 |
Q |
| |
|
|||||||||| |||||||||||| |||||| | || || | | ||||||| ||||| |||||| | || ||| |||||||||| |||||| |||| |
|
|
| T |
29543478 |
ttggtatctttgtaaattgttggaactattaactcaaaataattcattctctattgttaatgaaaatataaattttaagattttacatctgattgaaaat |
29543577 |
T |
|
| Q |
411 |
ctcaaatg |
418 |
Q |
| |
|
|| ||||| |
|
|
| T |
29543578 |
ctaaaatg |
29543585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 192 - 418
Target Start/End: Complemental strand, 29543964 - 29543740
Alignment:
| Q |
192 |
gttgaacaggcaatgaacattgcaaatttcatttcgatagactatcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtt |
291 |
Q |
| |
|
|||||||||| |||||||||| | || ||||| | | | ||| |||||| | ||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
29543964 |
gttgaacaggtaatgaacatttccaacttcatcttcacatactctcacaacatgcgtcttcgttgtggatttgtcttgtggaatgattgtttaacatatt |
29543865 |
T |
|
| Q |
292 |
tcttccgcttttgtgcatactggtatctttataaattgttggagctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagat |
391 |
Q |
| |
|
|||| | || | ||||| | || ||||| |||||| |||||||||| | || || |||||||||| ||||||||||||| |||| | |||||||| |
|
|
| T |
29543864 |
tctttagtttgtcagcatattattaccttta--aattgtaggagctattacctcataatactccattctatgttgttgatgaaaatctatcttttgagat |
29543767 |
T |
|
| Q |
392 |
tttacaattgattggaaatctcaaatg |
418 |
Q |
| |
|
|||||| |||||| || ||||||||| |
|
|
| T |
29543766 |
tttacatttgatttaaattctcaaatg |
29543740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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