View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_125 (Length: 252)
Name: NF10163A_low_125
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_125 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 16486708 - 16486491
Alignment:
| Q |
1 |
tcatctatattcatcataggttcagagataaagacaaaactaggtttgttattaacaatgagatttttcagggccaatcttgaaggggcattggcaaatc |
100 |
Q |
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| T |
16486708 |
tcatctatattcatcataggttcagagataaagacaaaactaggtttgttattaacaatgagatttttcagggccaatcttgaaggggcattggcaaatc |
16486609 |
T |
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| Q |
101 |
cccttatattccaatatagaaatttcatttggaaggtttatggttataaacctttgatctggttttgtagtttgatttagaggtgatggctttgttttgt |
200 |
Q |
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| T |
16486608 |
cccttatattccaatatagaaatttcatttggaaggtttatggttataaacctttgatctggttttgtagtttgatttagaggtgatggctttgttttgt |
16486509 |
T |
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| Q |
201 |
gttttctttctgtgggtg |
218 |
Q |
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| T |
16486508 |
gttttctttctgtgggtg |
16486491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 24306659 - 24306780
Alignment:
| Q |
18 |
aggttcagagataaagacaaaactaggtttgttattaacaatgagatttttcagggccaatcttgaaggggcattggcaaatccccttatattccaatat |
117 |
Q |
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| T |
24306659 |
aggttcagataaaaagataaaatcaggtttgtttttat-aatgaggtttttcaaggccaatcatgaaggggcattggcaaaaccctttatattccaatct |
24306757 |
T |
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| Q |
118 |
agaaatttcatttggaaggttta |
140 |
Q |
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| T |
24306758 |
atgaccttcatttgaaaggttta |
24306780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 21004338 - 21004266
Alignment:
| Q |
46 |
ttgttattaacaatgagatttttcagggccaatcttgaaggggcattggcaaatccccttatattccaatata |
118 |
Q |
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| T |
21004338 |
ttgttatttagaattaggtttttgagtgccaatcttgatgggacattgacaaatccccttatattccagtata |
21004266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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