View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10163A_low_136 (Length: 247)
Name: NF10163A_low_136
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_136 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 35558130 - 35557909
Alignment:
| Q |
9 |
gagatgaatgaaacagaagcagtggagcttgtgtcatatactgcaatgcattgtgtgcatttggaaggaaaagataggccaacaataagtgatattgtgg |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35558130 |
gagatgaatgaaacagaagcagtggagcttgtgtcatatactgcaatgcattgtgtgcatttggaaggaaaagatagaccaacaataagtgatattgtgg |
35558031 |
T |
|
| Q |
109 |
ctaatttggaacgtgctttcactctttgtgatagtagtagtcatggtagcatttctagtgctacattctctattggatctgactgatattgaaaatttta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35558030 |
ctaatttggaacgtgctttcactctttgtgatagtagtagtcatggtagcatttctagtgctacaatctctattggatctgactgatattgaaaatttta |
35557931 |
T |
|
| Q |
209 |
cttgattattattgattctttt |
230 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
35557930 |
cttgattattattgattctttt |
35557909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 35555394 - 35555322
Alignment:
| Q |
35 |
gcttgtgtcatatactgcaatgcattgtgtgcatttggaaggaaaagataggccaacaataagtgatattgtg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
35555394 |
gcttgtgtcatatactgcaatgcattgtgtgcatttggaaggaaaagatagaccaacaataagtgacattgtg |
35555322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 31754870 - 31754808
Alignment:
| Q |
57 |
cattgtgtgcatttggaaggaaaagataggccaacaataagtgatattgtggctaatttggaa |
119 |
Q |
| |
|
||||||||| |||||||||| |||||||| ||||| || |||||||||||||||||||||| |
|
|
| T |
31754870 |
cattgtgtgaatttggaagggaaagatagaccaactatggctgatattgtggctaatttggaa |
31754808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 25739961 - 25739918
Alignment:
| Q |
45 |
tatactgcaatgcattgtgtgcatttggaaggaaaagataggcc |
88 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| ||||| |
|
|
| T |
25739961 |
tatactgctatgcattgtgtgaatttggaaggaaaagaaaggcc |
25739918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University