View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_145 (Length: 245)
Name: NF10163A_low_145
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_145 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 53388249 - 53388425
Alignment:
| Q |
20 |
atcagaaaaagattcatctgaaggtactggtaatggaagtcccaaggaatatttctgtatgaaggatgatgatggtggaagtgaatctcggtcgcatgtt |
119 |
Q |
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| T |
53388249 |
atcagaaaaagattcatctgaaggtattagtgagggaagtcccaaggaacaattatgtatgaaggatgatgacggtggaagtgaatctcggtcgcatgtt |
53388348 |
T |
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| Q |
120 |
gattctgcatcaagtgagagagcaaagactacaatgctaccaaatggattaatcaacgaagattatagtcctgtaat |
196 |
Q |
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| T |
53388349 |
gattctacgtcaagtgagagaacaaagcctacaatgctaccagatggattaatcaatgaggattgtagtcctgtaat |
53388425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 10597538 - 10597664
Alignment:
| Q |
20 |
atcagaaaaagattcatctgaaggtactggtaatggaagtcccaaggaatatttctgtatgaaggatgatgatggtggaagtgaatctcggtcgcatgtt |
119 |
Q |
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| T |
10597538 |
atcagaaaaagattcatctgaaggtactagtgatggaagtcccaaggaacagttctgtatgaaggatgatgatggtagaagtgaatctcggtcgcatgtt |
10597637 |
T |
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| Q |
120 |
gattctgcatcaagtgagagagcaaag |
146 |
Q |
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| T |
10597638 |
gattctgcatcaagtgagagaacaaag |
10597664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 112 - 245
Target Start/End: Original strand, 10597666 - 10597799
Alignment:
| Q |
112 |
cgcatgttgattctgcatcaagtgagagagcaaagactacaatgctaccaaatggattaatcaacgaagattatagtcctgtaattgctgctgatgcatt |
211 |
Q |
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| T |
10597666 |
cgcatgttgattctgcattaagtgagagaacaaagaccacaatgctaccaaatggattaatcaatgaggatagcagtcctgtaatggctgctgatgcatc |
10597765 |
T |
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| Q |
212 |
ggattccacaagtaatttttctgacaaaacggat |
245 |
Q |
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| T |
10597766 |
ggattccacaagtgatcttgttgacaaaacggat |
10597799 |
T |
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