View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_151 (Length: 243)
Name: NF10163A_low_151
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_151 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 34293101 - 34293338
Alignment:
| Q |
6 |
agatggacatcaataatgcctttttacaaggaaaattaactgaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgt |
105 |
Q |
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| T |
34293101 |
agatggatgtcaataatgcctttttacaaggaaaattaactgaagatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgt |
34293200 |
T |
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| Q |
106 |
ttgcaaacttaagaaagctatatatggtttgagacaaacacctcgcgcgtggcatgattctttcaaggcattcgttctctctgttgggttttgtacaagc |
205 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
34293201 |
ttgcaaacttaagaaagctatatatggtttgagacaagcacctcgcgcgtggcatgattctctcaaggcattcgttctctttgttgggttttgtacaagc |
34293300 |
T |
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| Q |
206 |
ctaagtgatccatctttgtttatttacaacaaacacgg |
243 |
Q |
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| T |
34293301 |
ctaagtgatccatctttgtttatttacaacaaacacgg |
34293338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 243
Target Start/End: Complemental strand, 24486783 - 24486546
Alignment:
| Q |
6 |
agatggacatcaataatgcctttttacaaggaaaattaactgaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgt |
105 |
Q |
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| T |
24486783 |
agatggatgtcaataatgcctttttacaaggaaaattaactgaagatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgt |
24486684 |
T |
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| Q |
106 |
ttgcaaacttaagaaagctatatatggtttgagacaaacacctcgcgcgtggcatgattctttcaaggcattcgttctctctgttgggttttgtacaagc |
205 |
Q |
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| T |
24486683 |
ttgcaagcttaagaaagctatatatggtttgagacaagcacctcgcgcgtggcatgattctctcaaggcattcgttctctctgttgggttttgtacaagc |
24486584 |
T |
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| Q |
206 |
ctaagtgatccatctttgtttatttacaacaaacacgg |
243 |
Q |
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| T |
24486583 |
ctaagtgatccatctttgtttatttacaacaaacacgg |
24486546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 243
Target Start/End: Complemental strand, 24495117 - 24494880
Alignment:
| Q |
6 |
agatggacatcaataatgcctttttacaaggaaaattaactgaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgt |
105 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24495117 |
agatggatgtcaataatgcctttttacaaggaaaattaactgaagatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgt |
24495018 |
T |
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| Q |
106 |
ttgcaaacttaagaaagctatatatggtttgagacaaacacctcgcgcgtggcatgattctttcaaggcattcgttctctctgttgggttttgtacaagc |
205 |
Q |
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| T |
24495017 |
ttgcaaacttaagaaagctatatatggtttgagacaagcacctcgcgcgtggcatgattctctcaaggcattcgttctctatgttgggttttgtacaagc |
24494918 |
T |
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| Q |
206 |
ctaagtgatccatctttgtttatttacaacaaacacgg |
243 |
Q |
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| T |
24494917 |
ctaagtgatccatctttgtttatttacaacaaacacgg |
24494880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 59182 - 59037
Alignment:
| Q |
20 |
aatgcctttttacaaggaaaattaactgaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgtttgcaaacttaaga |
119 |
Q |
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| T |
59182 |
aatgccttcttgcaaggaaaattatctgaagatgtgtatatgcagcagcccccaggttttatccattctgaatttcctcatcatatttgtaagctcaaga |
59083 |
T |
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| Q |
120 |
aagctatatatggtttgagacaaacacctcgcgcgtggcatgattc |
165 |
Q |
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| T |
59082 |
aagcaatttatggtttgtggcaggcacctcgtgcatggcatgattc |
59037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 81949 - 81833
Alignment:
| Q |
47 |
gaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgtttgcaaacttaagaaagctatatatggtttgagacaaacac |
146 |
Q |
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|||||||| | |||| | ||||| || || |||||||| |||||| |||| | |||||||||||||| ||||| ||||||||||| || || || || | |
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| T |
81949 |
gaaaatgttttcatggaacaaccacctggtttcattcattctgaatttcctaatcatgtttgcaaactcaagaaggctatatatggattaaggcagactc |
81850 |
T |
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| Q |
147 |
ctcgcgcgtggcatgat |
163 |
Q |
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| T |
81849 |
ctcgagcatggcatgat |
81833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 32323741 - 32323656
Alignment:
| Q |
47 |
gaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgtttgcaaacttaagaaagctatatatgg |
132 |
Q |
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| T |
32323741 |
gaaaatgttttcatggaacaaccacctggtttcattcattctgaatttcctaatcatgtttgcaaactcaagaaggctatatatgg |
32323656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 18728777 - 18728692
Alignment:
| Q |
47 |
gaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgtttgcaaacttaagaaagctatatatgg |
132 |
Q |
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|||||||| | |||| | ||||| || || |||||||| |||||| |||| | |||||||||||||| ||||| ||||||||||| |
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| T |
18728777 |
gaaaatgttttcatggaacaaccacctggtttcattcattctgaatttcctaatcatgtttgcaaactcaagaaggctatatatgg |
18728692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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