View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10163A_low_16 (Length: 431)

Name: NF10163A_low_16
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10163A_low_16
NF10163A_low_16
[»] chr1 (8 HSPs)
chr1 (21-424)||(48584313-48584716)
chr1 (35-210)||(48618975-48619150)
chr1 (41-212)||(48628108-48628279)
chr1 (35-211)||(11546415-11546591)
chr1 (33-215)||(48660756-48660938)
chr1 (40-201)||(48655786-48655947)
chr1 (42-213)||(48666350-48666521)
chr1 (35-204)||(48652311-48652480)
[»] chr3 (1 HSPs)
chr3 (33-210)||(19666329-19666506)
[»] chr8 (1 HSPs)
chr8 (50-209)||(27227341-27227500)


Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 21 - 424
Target Start/End: Complemental strand, 48584716 - 48584313
Alignment:
Q  21 gttgggctgtaaataataaattggtaacaagagatgaggtgaagaagtgtttattggaagcaacaataggtgaaaaagcagagaagttgaagcaaaatgc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48584716 gttgggctgtaaataataaattggtaacaagagatgaggtgaagaagtgtttattggaagcaacaataggtgaaaaagcagagaagttgaagcaaaatgc 48584617  T
Q  121 aaaaaagtggaagaagaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatggaagacattaagaaacatgcatca 220  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48584616 aaacaagtggaagaagaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatggaagacattaagaaacatgcatca 48584517  T
Q  221 ttaattaataatgttaacatctagaacatgtaatatcatccatttcactgtcctttcctcactacatggataaggataattttattcatgcagtttatat 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48584516 ttaattaataatgttaacatctagaacatgtaatatcatccatttcactgtcctttcctcactacatggataaggataattttattcatgcagtttatat 48584417  T
Q  321 ttttgtgtttgcagttatatatgttgtgtgttttaagaattctaataaaaaataaccaagttatggaaaagtatttggatcctctattgcacttatctct 420  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48584416 ttttgtgtttgcagttatatatgttgtgtgttttaagaattgtaataaaaaataaccaagttatggaaaagtatttggatcctctattgcacttatctct 48584317  T
Q  421 gcta 424  Q
    ||||    
T  48584316 gcta 48584313  T

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Target: chr1; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 35 - 210
Target Start/End: Original strand, 48618975 - 48619150
Alignment:
Q  35 aataaattggtaacaagagatgaggtgaagaagtgtttattggaagcaacaataggtgaaaaagcagagaagttgaagcaaaatgcaaaaaagtggaaga 134  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||| |||||||| |||||||||  ||||||||||    
T  48618975 aataaattagtaacaagagatgaggtgaaaaagtgtttattggaagctacaacaggggaaaaagcagaggagttgaagaaaaatgcaatgaagtggaaga 48619074  T
Q  135 agaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatggaagacattaagaa 210  Q
    |||||||||| |||||  ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  48619075 agaaggcggatgaagcagtggccattggtggatcctctgatcggaatcttgatgaatttatggaagacattcagaa 48619150  T

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Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 48628279 - 48628108
Alignment:
Q  41 ttggtaacaagagatgaggtgaagaagtgtttattggaagcaacaataggtgaaaaagcagagaagttgaagcaaaatgcaaaaaagtggaagaagaagg 140  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||| |||||||| |||||||||  |||||||||||| |||    
T  48628279 ttggtaacaagagatgaggtgaagaagtgcttattggaagcaacaacaggggaaaaagcagaggagttgaagaaaaatgcaatgaagtggaagaaggagg 48628180  T
Q  141 cggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatggaagacattaagaaac 212  Q
    | ||||||||  ||||||||||||||||||||||| ||||||||||||  ||||||||||||||||| ||||    
T  48628179 cagaggaagcagtggccgttggtggatcctctgattggaatcttgatgcatttatggaagacattaaaaaac 48628108  T

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Target: chr1; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 35 - 211
Target Start/End: Complemental strand, 11546591 - 11546415
Alignment:
Q  35 aataaattggtaacaagagatgaggtgaagaagtgtttattggaagcaacaataggtgaaaaagcagagaagttgaagcaaaatgcaaaaaagtggaaga 134  Q
    |||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| ||| | |||||| ||||||||| |||||||||||    
T  11546591 aataaatttgtaacaagagatgaggtgaaaaagtgcttattagaagcaacaataggggaaaaagctgaggatttgaagaaaaatgcaataaagtggaaga 11546492  T
Q  135 agaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatggaagacattaagaaa 211  Q
    | ||||| ||||||||  ||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  11546491 aaaaggctgaggaagcagtggccattggtggatcctctgatcggaatcttgatgaatttttggaagacattaagaaa 11546415  T

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Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 48660938 - 48660756
Alignment:
Q  33 ataataaattggtaacaagagatgaggtgaagaagtgtttattggaagcaacaataggtgaaaaagcagagaagttgaagcaaaatgcaaaaaagtggaa 132  Q
    |||| ||| |||||||||||||||||||||||||||| ||||||||||||| || ||| ||||||||||||| |||||| ||||||||||  ||||||||    
T  48660938 ataagaaactggtaacaagagatgaggtgaagaagtgcttattggaagcaataacaggggaaaaagcagagaggttgaaacaaaatgcaatgaagtggaa 48660839  T
Q  133 gaagaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatggaagacattaagaaacatg 215  Q
    || |   || ||||| ||  |||| || ||||| ||||| || ||  |||||||||  |||||  ||||||||||||||||||    
T  48660838 gacggcagcagaggatgcgatggcagtcggtggttcctcggaccgacatcttgatgcatttatccaagacattaagaaacatg 48660756  T

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Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 40 - 201
Target Start/End: Complemental strand, 48655947 - 48655786
Alignment:
Q  40 attggtaacaagagatgaggtgaagaagtgtttattggaagcaacaataggtgaaaaagcagagaagttgaagcaaaatgcaaaaaagtggaagaagaag 139  Q
    |||| ||||||||||||||||||||||||| || |||||||| |||| ||| |||||||||||| |||||||| |||||||||  ||||||||||||       
T  48655947 attgataacaagagatgaggtgaagaagtgcttgttggaagctacaacaggggaaaaagcagaggagttgaagaaaaatgcaatcaagtggaagaaggca 48655848  T
Q  140 gcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatggaaga 201  Q
    |||||||| ||  | ||||| ||||||||||| || ||  |||||||||  ||||| |||||    
T  48655847 gcggaggatgcagttgccgtaggtggatcctccgaccgatatcttgatgcatttatcgaaga 48655786  T

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Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 42 - 213
Target Start/End: Complemental strand, 48666521 - 48666350
Alignment:
Q  42 tggtaacaagagatgaggtgaagaagtgtttattggaagcaacaataggtgaaaaagcagagaagttgaagcaaaatgcaaaaaagtggaagaagaaggc 141  Q
    |||||| |||||||||  | ||||| || ||||||||||  |||| ||| ||||||||||||| ||||||| |||||||||  |||| ||| |||  |||    
T  48666521 tggtaagaagagatgatttaaagaaatgcttattggaagttacaacaggggaaaaagcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggc 48666422  T
Q  142 ggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatggaagacattaagaaaca 213  Q
    |||||||||  |||| |||||||| ||||| || ||  |||||||||  |||||||||||||||||||||||    
T  48666421 ggaggaagcagtggcggttggtggttcctcggaccgacatcttgatgcatttatggaagacattaagaaaca 48666350  T

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Target: chr1; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 48652480 - 48652311
Alignment:
Q  35 aataaattggtaacaagagatgaggtgaagaagtgtttattggaagcaacaataggtgaaaaagcagagaagttgaagcaaaatgcaaaaaagtggaaga 134  Q
    ||||||||||| ||||||||||||||||||||||| || ||||||||||     || |||||||||||| |||||||| |||||||||  ||||||||||    
T  48652480 aataaattggtgacaagagatgaggtgaagaagtgcttgttggaagcaatggctggggaaaaagcagaggagttgaagaaaaatgcaatcaagtggaaga 48652381  T
Q  135 agaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatggaagacat 204  Q
    |    |||||||| ||  | ||| | |||||||| ||||||| | |||||||||  |||||| |||||||    
T  48652380 aagcagcggaggatgcggttgccataggtggatcatctgatctgcatcttgatgcatttatgcaagacat 48652311  T

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Target: chr3 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 33 - 210
Target Start/End: Original strand, 19666329 - 19666506
Alignment:
Q  33 ataataaattggtaacaagagatgaggtgaagaagtgtttattggaagcaacaataggtgaaaaagcagagaagttgaagcaaaatgcaaaaaagtggaa 132  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| |||| ||||||||||||||||||  ||||||||    
T  19666329 ataataaattggtaacaagagatgaagtgaagaagtgcttattggaagcaacaataggagaaaaaggagaggagttgaagcaaaatgcaatcaagtggaa 19666428  T
Q  133 gaagaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatggaagacattaagaa 210  Q
    |||   ||||||||||||  ||||    ||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  19666429 gaaagcggcggaggaagcggtggcgaccggtggttcctctgatcggaatcttgatgaatttatggaagacattaagaa 19666506  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 50 - 209
Target Start/End: Complemental strand, 27227500 - 27227341
Alignment:
Q  50 agagatgaggtgaagaagtgtttattggaagcaacaataggtgaaaaagcagagaagttgaagcaaaatgcaaaaaagtggaagaagaaggcggaggaag 149  Q
    ||||||||||||||||| || |||||||||||||    |||   ||||||||||| ||||||||||||  |||  ||||||||||||   |||||||  |    
T  27227500 agagatgaggtgaagaaatgcttattggaagcaatggcagggccaaaagcagagatgttgaagcaaaacacaatcaagtggaagaaggcagcggaggctg 27227401  T
Q  150 ctttggccgttggtggatcctctgatcggaatcttgatgagtttatggaagacattaaga 209  Q
    |  | || || ||||| |||||||||||| || ||||||  |||||||||||||||||||    
T  27227400 cagttgcggtaggtggttcctctgatcggcatattgatgcatttatggaagacattaaga 27227341  T

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