View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_166 (Length: 238)
Name: NF10163A_low_166
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_166 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 31700742 - 31700972
Alignment:
| Q |
1 |
atgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtgg |
100 |
Q |
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| T |
31700742 |
atgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtgg |
31700841 |
T |
|
| Q |
101 |
tacttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31700842 |
tacttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactattgtgacca |
31700941 |
T |
|
| Q |
201 |
ctatggtctat-tggagtcaatggatactgc |
230 |
Q |
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||||||||||| ||||||||||||||||||| |
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| T |
31700942 |
ctatggtctatgtggagtcaatggatactgc |
31700972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 35 - 226
Target Start/End: Original strand, 31723329 - 31723521
Alignment:
| Q |
35 |
tctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggtacttaaccaaaccagttatgaacgtccacgcta |
134 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| | || |||||||| || |
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| T |
31723329 |
tctgcaataaagaagaggtttattacacatggaacatcaaagatagtactcaaatatcaaaagtggtacttaaccaaaccagtaacgatcgtccacgata |
31723428 |
T |
|
| Q |
135 |
catatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgaccactatggtctat-tggagtcaatggata |
226 |
Q |
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| T |
31723429 |
cgtatggtcaaaggacgacaaatcatggaatatttattcaagaataccaggagacgattgtgaccattatggtcgatgtggagtcaatggata |
31723521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 31716051 - 31716276
Alignment:
| Q |
2 |
tgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggt |
101 |
Q |
| |
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||||||||||| | ||| || |||||| || |||| |||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |||| |
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| T |
31716051 |
tgaagcctaatgatattttcagttacaattttgtctggaataaagaagaggtttattacacatggaacatcaaagatagttctcaagtatcaaaaatggt |
31716150 |
T |
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| Q |
102 |
acttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgaccac |
201 |
Q |
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|||||||||||||||| | || |||||||||||| ||||||||||||||| ||||| ||||| | ||||||||| |||||| | |||| | ||||||| |
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| T |
31716151 |
acttaaccaaaccagtaaagatcgtccacgctacgtatggtcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccat |
31716250 |
T |
|
| Q |
202 |
tatggtctat-tggagtcaatggata |
226 |
Q |
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||||||| || ||||||||||||||| |
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| T |
31716251 |
tatggtcaatgtggagtcaatggata |
31716276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 31721925 - 31722150
Alignment:
| Q |
2 |
tgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggt |
101 |
Q |
| |
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||||||||||| | ||| || |||||| || |||| |||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |||| |
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| T |
31721925 |
tgaagcctaatgatattttcagttacaattttgtctggaataaagaagaggtttattacacatggaacatcaaagatagttctcaagtatcaaaaatggt |
31722024 |
T |
|
| Q |
102 |
acttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgaccac |
201 |
Q |
| |
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|||||||||||||||| | || |||||||||||| ||||||||||||||| ||||| ||||| | ||||||||| |||||| | |||| | ||||||| |
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| T |
31722025 |
acttaaccaaaccagtaaagatcgtccacgctacgtatggtcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccat |
31722124 |
T |
|
| Q |
202 |
tatggtctat-tggagtcaatggata |
226 |
Q |
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||||||| || ||||||||||||||| |
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| T |
31722125 |
tatggtcaatgtggagtcaatggata |
31722150 |
T |
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