View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10163A_low_169 (Length: 237)

Name: NF10163A_low_169
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10163A_low_169
NF10163A_low_169
[»] chr4 (12 HSPs)
chr4 (11-231)||(4025194-4025414)
chr4 (11-229)||(4009966-4010184)
chr4 (11-231)||(4002267-4002487)
chr4 (11-223)||(3801562-3801774)
chr4 (11-223)||(3954360-3954555)
chr4 (12-231)||(3809984-3810203)
chr4 (11-231)||(3986963-3987183)
chr4 (11-223)||(4218619-4218831)
chr4 (11-126)||(3817657-3817772)
chr4 (11-126)||(3919692-3919807)
chr4 (11-126)||(3932916-3933031)
chr4 (11-66)||(3963212-3963267)
[»] chr5 (1 HSPs)
chr5 (16-231)||(13397918-13398133)
[»] scaffold1360 (1 HSPs)
scaffold1360 (11-67)||(1911-1967)
[»] chr8 (1 HSPs)
chr8 (15-66)||(7069135-7069186)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 4025414 - 4025194
Alignment:
Q  11 gtgttattggaatttggggtatggggggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 110  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4025414 gtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 4025315  T
Q  111 ggcaaaggtaagtgaagaattaggaagacacggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcacca 210  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4025314 ggcaaaggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcacca 4025215  T
Q  211 aatgggttgtctagttatatt 231  Q
    |||||||||||||||||||||    
T  4025214 aatgggttgtctagttatatt 4025194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 4010184 - 4009966
Alignment:
Q  11 gtgttattggaatttggggtatggggggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 110  Q
    |||| |||||||||||||| |||||  |||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||    
T  4010184 gtgtcattggaatttggggcatgggaagtattggcaagacaactattgcaggagaaatttttaaccaaaattgctctgaatatgaaggttgttgtttttt 4010085  T
Q  111 ggcaaaggtaagtgaagaattaggaagacacggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcacca 210  Q
    || ||||||||| ||  ||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||| |||    
T  4010084 ggaaaaggtaagcgagcaattaggaagacatggaagaacatttttgaaagaaaaacttttttctacactattagcagaagatgtgaaaatccgttcgcca 4009985  T
Q  211 aatgggttgtctagttata 229  Q
    ||||||||||||| |||||    
T  4009984 aatgggttgtctaattata 4009966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 4002487 - 4002267
Alignment:
Q  11 gtgttattggaatttggggtatggggggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 110  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| | || |||||||||||||||||||| |||||||||    
T  4002487 gtgtcattggaatttggggtatgggaggtattggcaagacaactattgctgaagaagtttttaaccgaagttgctctgaatatgaaggtttttgtttttt 4002388  T
Q  111 ggcaaaggtaagtgaagaattaggaagacacggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcacca 210  Q
    || ||||||||||||||||| |||||| || |||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||  ||||||||    
T  4002387 ggaaaaggtaagtgaagaatcaggaaggcatggaataacatttttaaaagaaaagcttttttctacactattagcagaagatgtgaaaattaattcacca 4002288  T
Q  211 aatgggttgtctagttatatt 231  Q
    |||||| |||||| |||||||    
T  4002287 aatgggctgtctaattatatt 4002267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 3801774 - 3801562
Alignment:
Q  11 gtgttattggaatttggggtatggggggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 110  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||| ||| ||||||||| |||||||||||| |    
T  3801774 gtgttattggaatttggggtatgggcggtattggcaagacaactattgcagaagaaatatttaaccaaaatcgctttgaatatgatggttgttgttttat 3801675  T
Q  111 ggcaaaggtaagtgaagaattaggaagacacggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcacca 210  Q
    | |||| || |||   ||||||||||| |  ||||||||| |||  |||||||| ||||||||||  ||||||   ||||||||||||||||||||||||    
T  3801674 gtcaaatgtgagtttggaattaggaaggcgtggaataacaatttaaaaagaaaagcttttttctaacctattaaatgaagatgtgaaaatcgattcacca 3801575  T
Q  211 aatgggttgtcta 223  Q
    |||||||||||||    
T  3801574 aatgggttgtcta 3801562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 3954360 - 3954555
Alignment:
Q  11 gtgttattggaatttggggtatggggggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 110  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| ||| | || ||||||||||||||||||||||||||||||    
T  3954360 gtgtcattggaatttggggtatgggaggtattggcaagacaactattgctgaagaagtttataaccgaagttgctctgaatatgaaggttgttgtttttt 3954459  T
Q  111 ggcaaaggtaagtgaagaattaggaagacacggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcacca 210  Q
    ||||||||| ||||| ||||||||||| ||||                 ||| | |||||||| | ||||||||||||||||||||||||||||||||||    
T  3954460 ggcaaaggtgagtgacgaattaggaaggcacg-----------------gaacagcttttttcaacactattagcagaagatgtgaaaatcgattcacca 3954542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 3810203 - 3809984
Alignment:
Q  12 tgttattggaatttggggtatggggggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgttttttg 111  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||  ||||| | ||| | |||| ||| ||||||||||| ||||||||||| |||    
T  3810203 tgttatcggaatttggggtatgggtggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgtttcttg 3810104  T
Q  112 gcaaaggtaagtgaagaattaggaagacacggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcaccaa 211  Q
    | ||||||||||||||| |||  |||||| |||||    | ||| ||| | ||||||||||||| |||||| ||||||||||||||||| ||| ||||||    
T  3810103 gaaaaggtaagtgaagagttaacaagacatggaatggattctttaaaaaataaacttttttctaaactattggcagaagatgtgaaaattgatacaccaa 3810004  T
Q  212 atgggttgtctagttatatt 231  Q
    || ||||| ||||| |||||    
T  3810003 attggttgcctagtgatatt 3809984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 3987183 - 3986963
Alignment:
Q  11 gtgttattggaatttggggtatggggggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 110  Q
    |||| ||||||||||||||||||   || |||||||||||||||||||| |||||||||||||| |||||| ||||||||||||| ||||||||||||||    
T  3987183 gtgtgattggaatttggggtatgcctggcattggcaagacaactattgcagaagaaatttttaaccaaaatcgctctgaatatgatggttgttgtttttt 3987084  T
Q  111 ggcaaaggtaagtgaagaattaggaagacacggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcacca 210  Q
    ||||||||| |||||| | |||  |  ||| ||||||  || ||| |||||||  |||||| ||| | |||| || |||||||||||||| ||| |||||    
T  3987083 ggcaaaggtgagtgaaaagttaaaattacatggaatagaatctttaaaagaaaccctttttactaaaatattggccgaagatgtgaaaattgatacacca 3986984  T
Q  211 aatgggttgtctagttatatt 231  Q
    ||| ||||||| ||| |||||    
T  3986983 aataggttgtccagtgatatt 3986963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 4218831 - 4218619
Alignment:
Q  11 gtgttattggaatttggggtatggggggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 110  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||  ||||| | ||| | |||| ||| ||||||||||| |||||||||||| |    
T  4218831 gtgttattggaatttggggtatgggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgttttat 4218732  T
Q  111 ggcaaaggtaagtgaagaattaggaagacacggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcacca 210  Q
    | |||| || |||   | ||||  ||| |  |||||||||||||| |||||||  ||||||||||  ||||||   ||||||||||||||||||||| ||    
T  4218731 gtcaaatgtgagtttgggattacaaagtcgtggaataacatttttaaaagaaatgcttttttctaacctattaaatgaagatgtgaaaatcgattcatca 4218632  T
Q  211 aatgggttgtcta 223  Q
    |||||||||||||    
T  4218631 aatgggttgtcta 4218619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 3817772 - 3817657
Alignment:
Q  11 gtgttattggaatttggggtatggggggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 110  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||  |||||| | || || ||||| ||||||||||| ||    
T  3817772 gtgttattggaatttggggcatgggcggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttctt 3817673  T
Q  111 ggcaaaggtaagtgaa 126  Q
    || |||||| ||||||    
T  3817672 ggaaaaggtcagtgaa 3817657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 3919692 - 3919807
Alignment:
Q  11 gtgttattggaatttggggtatggggggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 110  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||  |||||| | || || ||||| ||||||||||| ||    
T  3919692 gtgttattggaatttggggcatgggcggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttctt 3919791  T
Q  111 ggcaaaggtaagtgaa 126  Q
    || |||||| ||||||    
T  3919792 ggaaaaggtcagtgaa 3919807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 3932916 - 3933031
Alignment:
Q  11 gtgttattggaatttggggtatggggggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 110  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||  |||||| | || || ||||| ||||||||||| ||    
T  3932916 gtgttattggaatttggggcatgggcggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttctt 3933015  T
Q  111 ggcaaaggtaagtgaa 126  Q
    || |||||| ||||||    
T  3933016 ggaaaaggtcagtgaa 3933031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 3963212 - 3963267
Alignment:
Q  11 gtgttattggaatttggggtatggggggtattggcaagacaactattgccgaagaa 66  Q
    ||||| |||| |||||||||||||| |||||||||||||||||  |||| ||||||    
T  3963212 gtgttgttgggatttggggtatgggtggtattggcaagacaacccttgcagaagaa 3963267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 13398133 - 13397918
Alignment:
Q  16 attggaatttggggtatggggggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgttttttggcaa 115  Q
    ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||||    
T  13398133 attggtatttggggtatgggaggtattggaaagacaactattgccgaagaaatttttaatcaaatttgttctgaatatgaaggatgttgttttttggcaa 13398034  T
Q  116 aggtaagtgaagaattaggaagacacggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcaccaaatgg 215  Q
    |||| ||||||||||||||||| || |||||| | ||||| |||||||| ||| |||||| |||||||||||||||||| |||||||||||| |||||||    
T  13398033 aggtgagtgaagaattaggaaggcatggaatagcgtttttaaaagaaaagcttgtttctacactattagcagaagatgtaaaaatcgattcatcaaatgg 13397934  T
Q  216 gttgtctagttatatt 231  Q
    |||| |||||||||||    
T  13397933 gttgcctagttatatt 13397918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1360 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold1360
Description:

Target: scaffold1360; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 1911 - 1967
Alignment:
Q  11 gtgttattggaatttggggtatggggggtattggcaagacaactattgccgaagaaa 67  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||    
T  1911 gtgttattggaatttggggcatgggcggtattggcaagacaactattgcagaagaaa 1967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 7069186 - 7069135
Alignment:
Q  15 tattggaatttggggtatggggggtattggcaagacaactattgccgaagaa 66  Q
    ||||||||||||||||||| | |||||||| |||||||||||||| ||||||    
T  7069186 tattggaatttggggtatgagtggtattggaaagacaactattgcagaagaa 7069135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University