View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_17 (Length: 426)
Name: NF10163A_low_17
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 33102506 - 33102087
Alignment:
| Q |
1 |
gaacatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102506 |
gaacatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataat |
33102407 |
T |
|
| Q |
101 |
agaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaacgtaacaataacaaagtgtaccaaatgatacactgaaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
33102406 |
agaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaaga |
33102307 |
T |
|
| Q |
201 |
accacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagagaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102306 |
accacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagagaga |
33102207 |
T |
|
| Q |
301 |
agattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcgat |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102206 |
agattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcgat |
33102107 |
T |
|
| Q |
401 |
gaacctatagttcatggcat |
420 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
33102106 |
gaacctatagttcatggcat |
33102087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 52716731 - 52716666
Alignment:
| Q |
62 |
aagagaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttc |
127 |
Q |
| |
|
|||||||||||| ||||||||||| || || || | |||||||| |||||||||||||||||||| |
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|
| T |
52716731 |
aagagaaacaacgtcagaatcaactttgaatgatgttatagaagctgcagtttcaggaaactgttc |
52716666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 52711419 - 52711358
Alignment:
| Q |
66 |
gaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttc |
127 |
Q |
| |
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|||||||||||||||||||| || || || | |||||||| |||||||| ||||||||||| |
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| T |
52711419 |
gaaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttc |
52711358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 2 - 415
Target Start/End: Original strand, 10838577 - 10838990
Alignment:
| Q |
2 |
aacatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataata |
101 |
Q |
| |
|
|||||| | ||| |||||||||||||| ||||| || |||||||||||||| ||||| | || | ||| || ||||| ||||||||||||| || |
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| T |
10838577 |
aacatgtaacttcccatcatcaccaactgatgcatcagtttcaagaaaatctcttccatctaacgacataacgtccgaatcgaccttaaaggaaacgatg |
10838676 |
T |
|
| Q |
102 |
gaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaacgtaacaataacaaagtgtaccaaatgatacactgaagaa |
201 |
Q |
| |
|
||||| || ||||| |||||||| ||||| |||| ||||||||||||||| ||||||||| | || | || | |||||||||||| ||||||||||||| |
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|
| T |
10838677 |
gaagccgcggtttctggaaactgctccatgattaaaagcttagcaccacggtactcaaaaagaaaaagcaaaagagtgtaccaaataatacactgaagaa |
10838776 |
T |
|
| Q |
202 |
ccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagagagaa |
301 |
Q |
| |
|
|||||||||||||||| | | |||| ||||| |||||||||||||| || | | ||||||||||||||||||||||| || | |||||| | || || |
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|
| T |
10838777 |
ccacaacttgaaccattaagctacctgaataatcaccatacatagcaattaacaaaggaattcccataaccaaagtgttaggaagtgttgataatgaaaa |
10838876 |
T |
|
| Q |
302 |
gattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcgatg |
401 |
Q |
| |
|
|||||| |||||||| ||||| | ||||| ||||| ||||| | || |||||| | ||||||||||||||||||||||| || || || ||| |
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|
| T |
10838877 |
gattgttatcatccattctaaattgccatttttagtgaacaatgtccataatgaaagtgctactagcatgatgattttttgaagtgtgtctgcagctatg |
10838976 |
T |
|
| Q |
402 |
aacctatagttcat |
415 |
Q |
| |
|
||||| ||||||| |
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|
| T |
10838977 |
aacctgaagttcat |
10838990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 34971296 - 34971055
Alignment:
| Q |
3 |
acatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataatag |
102 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||| || || | ||| ||| | ||||| | ||||| ||||||||||||||| || || || ||||||| |
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|
| T |
34971296 |
acatgaagtttaccatcttcaccaacttcagcttcagtttgaagtggctctttaccatccaaagaaagaacatcagaatcaactttgaatgatataatag |
34971197 |
T |
|
| Q |
103 |
aagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaacgtaacaataacaaagtgtaccaaatgatacactgaagaac |
202 |
Q |
| |
|
|| ||||||| |||||||||||||| | ||| |||| | ||||||| | ||||||||| ||||| | ||| || |||||||||||||| |||||||| |
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|
| T |
34971196 |
aaccagcagtatcaggaaactgttcaacaatgagaatcctagcacccctatactcaaacaaaaacaacatcaatgtataccaaatgatacattgaagaac |
34971097 |
T |
|
| Q |
203 |
cacaacttgaaccataagggtaccggaatattcaccatacat |
244 |
Q |
| |
|
|| | |||||||||||||||||| |||| ||||||||||| |
|
|
| T |
34971096 |
aactatttgaaccataagggtaccagaatcatcaccatacat |
34971055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 280
Target Start/End: Complemental strand, 25038959 - 25038852
Alignment:
| Q |
173 |
caaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataacc |
272 |
Q |
| |
|
|||||| |||||||||||||| |||||||| |||| ||| ||||| | |||| ||| ||||||||||||| || | || | ||||||||||||||| |
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|
| T |
25038959 |
caaagtataccaaatgatacattgaagaacaacaatttgtaccattaaactacctgaaaattcaccatacattcctttaagtaaaggaattcccataacc |
25038860 |
T |
|
| Q |
273 |
aaagtgtt |
280 |
Q |
| |
|
|||||||| |
|
|
| T |
25038859 |
aaagtgtt |
25038852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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