View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_171 (Length: 236)
Name: NF10163A_low_171
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_171 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 54793601 - 54793816
Alignment:
| Q |
1 |
gaatgggagaccttgatgagaaggtttttgtgcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagctttgctctgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793601 |
gaatgggagaccttgatgagaaggtttttgtgcaagtctgcaagaaaagatttgtttctcaagaagaagctgggatgaaggccatggagctttgctctgt |
54793700 |
T |
|
| Q |
101 |
ttggcaggaggatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgttt |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
54793701 |
ttggcaggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacccatgaggtatgtaccataaagacatgctctgtgttt |
54793800 |
T |
|
| Q |
201 |
ttgaagtagctatgct |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
54793801 |
ttgaagtagctatgct |
54793816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 52286282 - 52286496
Alignment:
| Q |
1 |
gaatgggagaccttgatgagaaggtttttgtgcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagctttgctctgt |
100 |
Q |
| |
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||||||||||||||||| |||| ||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
52286282 |
gaatgggagaccttgatcagaaagtttttgtgaatgtctgcaagaaaagatttctttctgaagaagaagctgggatgaaggccatggagctttgctcttt |
52286381 |
T |
|
| Q |
101 |
ttggcaggaggatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgttt |
200 |
Q |
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| T |
52286382 |
ttggcaggagaatgtgaagaattcagcttggcacccttttaaagtcgtcagagagaatgatagccatgtggtatgtaccataaagacatgctctgtgttt |
52286481 |
T |
|
| Q |
201 |
ttgaagtagctatgc |
215 |
Q |
| |
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||| ||||| ||||| |
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| T |
52286482 |
ttgcagtagttatgc |
52286496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 54775932 - 54775823
Alignment:
| Q |
107 |
ggaggatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgtttttgaag |
206 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775932 |
ggagcatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacccatgaggtatgtaccataaagacatgctctgtgtttttgaag |
54775833 |
T |
|
| Q |
207 |
tagctatgct |
216 |
Q |
| |
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|||||||||| |
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|
| T |
54775832 |
tagctatgct |
54775823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 801450 - 801656
Alignment:
| Q |
3 |
atgggagaccttgatgagaaggtttttgtgcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagctttgctctgttt |
102 |
Q |
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|||||||||||||| |||||||||||||| | | |||||||||||||||| |||| || ||||||||||| |||||| | |||||||||||| | | |
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| T |
801450 |
atgggagaccttgaccagaaggtttttgtgaatgcctgcaagaaaagattttcttct---gatgaagctgggataaaggccgttgagctttgctctttat |
801546 |
T |
|
| Q |
103 |
ggcaggaggatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgttttt |
202 |
Q |
| |
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||||||| ||||||| || ||||| ||||||||||||||||||||||| |||||||| | | |||||||||| ||||| |||||||||||||||| |
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| T |
801547 |
ggcaggaaaatgtgaagaactcagcttggcacccttttaaagtggtcagtcagaatgataaccccgtggtatgtaccctaaagccatgctctgtgttttt |
801646 |
T |
|
| Q |
203 |
gaagtagcta |
212 |
Q |
| |
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| ||| |||| |
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| T |
801647 |
ggagtggcta |
801656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 54775980 - 54775950
Alignment:
| Q |
1 |
gaatgggagaccttgatgagaaggtttttgt |
31 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
54775980 |
gaatgggagaccttgatgagaaggtttttgt |
54775950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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