View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_175 (Length: 233)
Name: NF10163A_low_175
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_175 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 43561350 - 43561159
Alignment:
| Q |
21 |
atcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttcttccgcttttgtgcatactggtatctttataaattgttgga |
120 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43561350 |
atcacaacagacgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccatttcttctgcttttgtgcatactggtatctttataaattgttgga |
43561251 |
T |
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| Q |
121 |
gctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagattttacaattgattggaaatctcaaatggttttttg |
212 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43561250 |
gctattagctcacaacactccattctcggttgttgatgaaagtctagcatttgagattttacaattgattggaaatctcaaatggttttttg |
43561159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 17729810 - 17730001
Alignment:
| Q |
21 |
atcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttcttccgcttttgtgcatactggtatctttataaattgttgga |
120 |
Q |
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||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||| |
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| T |
17729810 |
atcacaacaggcgttttcgttgtggatttgttttgcgaaatgattgtttaacccgtttcttctgtttttgtgcatactggtatctttataaattgctgga |
17729909 |
T |
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| Q |
121 |
gctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagattttacaattgattggaaatctcaaatggttttttg |
212 |
Q |
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| T |
17729910 |
gctattagctcacaatactccattctcggttgttgatgaaagcctagcatttgagattttacaattgattggaaatctcaaatgattttttg |
17730001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 43569419 - 43569380
Alignment:
| Q |
173 |
gagattttacaattgattggaaatctcaaatggttttttg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
43569419 |
gagattttacaattgattggaaatctcaaatggttttttg |
43569380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 1622463 - 1622290
Alignment:
| Q |
31 |
gcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttcttccgcttttgtgcatactggtatctttataaattgttggagctattagcg |
130 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||||||| | |||| |||||| ||||||||||||||||||||| | ||||||| |
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| T |
1622463 |
gcgtcttcgttgtggatttgtcta-caaaatgattacttaacccgtttcttc-gattttttgcatattggtatctttataaattgttgcaattattagct |
1622366 |
T |
|
| Q |
131 |
cacaacactccattctcggttgttgatgaaagtctagcatttgagattttacaattgattggaaatctcaaatggt |
206 |
Q |
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| T |
1622365 |
cacaatactccattctcggatgttattgaaaatctagcgtttgagattttacaattgattggaaatctcaaatggt |
1622290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 29 - 211
Target Start/End: Complemental strand, 1602011 - 1601831
Alignment:
| Q |
29 |
aggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttcttccgcttttgtgcatactggtatctttataaattgttggagctattag |
128 |
Q |
| |
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|||| ||||| |||||||||||||| |||||||||| ||||| |||||||| | |||| |||||| |||||||||||||||||| | |||||||||| |
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| T |
1602011 |
aggcatcttcattgtggatttgtcta-caaaatgattacttaacttgtttcttc-gattttctgcatattggtatctttataaattgcttgagctattag |
1601914 |
T |
|
| Q |
129 |
cgcacaacactccattctcggttgttgatgaaagtctagcatttgagattttacaattgattggaaatctcaaatggtttttt |
211 |
Q |
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| ||| | |||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1601913 |
ctcacgatactccattctcggttgttattgaaaatctagcgtttgagattttacaattgattggaaatctcaaatggtgtttt |
1601831 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 212
Target Start/End: Original strand, 1601168 - 1601349
Alignment:
| Q |
31 |
gcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttcttccgcttttgtgcatactggtatctttataaattgttggagctattagcg |
130 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||||||||||||||||||||| | |||| ||||||| ||||||| |||||||| ||||||||||||| |
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| T |
1601168 |
gcgtattcattgtggatttgtcttgcgaaatgattgtttaacccgtttcttctgtttttctgcatacaggtatctctataaatttctggagctattagct |
1601267 |
T |
|
| Q |
131 |
cacaacactccattctcggttgttgatgaaagtctagcatttgagattttacaattgattggaaatctcaaatggttttttg |
212 |
Q |
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||| | |||||||| || | | || ||||| | ||| ||||||||||||||||||| ||||||||||||| ||| ||||| |
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| T |
1601268 |
cacgatactccattatcaggttttattgaaaatatagagtttgagattttacaattgaatggaaatctcaaacggtgttttg |
1601349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 212
Target Start/End: Original strand, 1621651 - 1621827
Alignment:
| Q |
31 |
gcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttcttcc-gcttttgtgcatactggtatctttataaattgttggagctattagc |
129 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||||||||||| ||| || | |||| ||||||| |||||| |||||||| || |||||||||| |
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| T |
1621651 |
gcgtcttcattgtggatttgtcttgcggaatgattgtttaacccatttttttttgtttttctgcatacaagtatctctataaatttctg-agctattagc |
1621749 |
T |
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| Q |
130 |
gcacaacactccattctcggttgttgatgaaagtctagcatttgagattttacaattgattggaaatctcaaatggttttttg |
212 |
Q |
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||||| |||| || |||||| ||||| |||| ||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
1621750 |
tcacaatactc-----tcagttgttattgaaaatctaaagtttgagattttacaattgattggaaatctcagatggtgttttg |
1621827 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 29543920 - 29543740
Alignment:
| Q |
22 |
tcacaagaggcgtcttcgttgtggatttgtcttgcaaaatgattgtttaacccgtttcttccgcttttgtgcatactggtatctttataaattgttggag |
121 |
Q |
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|||||| | ||||||||||||||||||||||||| |||||||||||||| |||||| | || | ||||| | || ||||| |||||| |||| |
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| T |
29543920 |
tcacaacatgcgtcttcgttgtggatttgtcttgtggaatgattgtttaacatatttctttagtttgtcagcatattattaccttta--aattgtaggag |
29543823 |
T |
|
| Q |
122 |
ctattagcgcacaacactccattctcggttgttgatgaaagtctagcatttgagattttacaattgattggaaatctcaaatg |
204 |
Q |
| |
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|||||| | || || |||||||||| ||||||||||||| |||| | |||||||||||||| |||||| || ||||||||| |
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| T |
29543822 |
ctattacctcataatactccattctatgttgttgatgaaaatctatcttttgagattttacatttgatttaaattctcaaatg |
29543740 |
T |
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