View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_179 (Length: 231)
Name: NF10163A_low_179
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_179 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 6 - 231
Target Start/End: Complemental strand, 9971219 - 9970994
Alignment:
| Q |
6 |
catttgacactatttaaaagaggaatacaccaacaatagattgggttaaatgataagagatttgaacttcttaaatggtcattaatttgattattagcac |
105 |
Q |
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| T |
9971219 |
catttgacactatttaaaagaggaatacaccaacaatagattgggttaaatgataagagatttgaacttcttaaatggtcactgatttgattattagcac |
9971120 |
T |
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| Q |
106 |
ttgtgtatgnnnnnnntaacgttgaaaggagataattcaccttgtgtacctcacagatttcctgataaaaattagatgtcgttaaacggtggtgannnnn |
205 |
Q |
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| T |
9971119 |
ttgtgtatgaaaaaaataaagttgaaaggagataattcaccttgtgtacctcacagattttctgacaaaaattagatgtcgctaaacggtggtgattttt |
9971020 |
T |
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| Q |
206 |
nnaccgataacatggtaattataaaa |
231 |
Q |
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||| |||||||||||||||||||| |
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| T |
9971019 |
ttaccaataacatggtaattataaaa |
9970994 |
T |
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