View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_18 (Length: 423)
Name: NF10163A_low_18
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_18 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 28 - 423
Target Start/End: Complemental strand, 2902372 - 2901977
Alignment:
| Q |
28 |
gaggcagggctttaccaactttgttgaactcagttatgaatgcagtcgaggtaaatataaccagattctactttctcagcttttgttgtttctttacttt |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2902372 |
gaggcagggctttaccaactttgttgaactcagttatgaatgcagtcgaggtaaatataaccagattctactttctcagcttttgttgtttctttacttt |
2902273 |
T |
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| Q |
128 |
gcaattagtctcataaccatgctttctttggtctttcagagtatcttgacttatctccatattttcactagcaaaaagaaacatatgactatcctcaaag |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2902272 |
gcaattagtctcataaccatgctttctttggtctttcagagtatcttgacttatctccatattttcactagcaaaaagaaacatatgactatcctcaaag |
2902173 |
T |
|
| Q |
228 |
atgtaagtggaatagtcaaacctcgcaggatgacacttcttcttggtcctccacgttctggcaagaccacacttcttttagctttgtcaggaaagcttga |
327 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2902172 |
atgtaagtggaatagtcaaacctcgcaggatgacactgcttcttggtcctccaagttctggaaagaccacacttcttttagctttgtcaggaaagcttga |
2902073 |
T |
|
| Q |
328 |
tcccaatctcaaggtgaaaatcattttctcttaatttcattaatatatactgttctctttcgctgttcatgaggtttcagttcagtaataaaaaca |
423 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2902072 |
tcccaatctcaaggtgaaaatcattttctcttaatttcattaatatatactgttctctttcgctgttcatgaggttttagttcagtaataaaaaca |
2901977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 28 - 422
Target Start/End: Original strand, 2882641 - 2883032
Alignment:
| Q |
28 |
gaggcagggctttaccaactttgttgaactcagttatgaatgcagtcgaggtaaatataaccagattctactttctcagcttttgttgtttctttacttt |
127 |
Q |
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||||||||||||| ||||||||||||||||| |||| || ||||||||||||||| ||||||||||||||||||||| | || ||||| || |
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| T |
2882641 |
gaggcagggctttgccaactttgttgaactcggttactaacacagtcgaggtaaatacaaccagattctactttctcagttgttattgttgtttc----- |
2882735 |
T |
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| Q |
128 |
gcaattagtctcataaccatgcttt--ctttggtctttcagagtatcttgacttatctccatattttcactagcaaaaagaaacatatgactatcctcaa |
225 |
Q |
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||||||||||||||||| | ||| |||||||||||||||||||||||| || ||||||||| |||| |||| ||||||||| ||||||||||| || |
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| T |
2882736 |
gcaattagtctcataacttttttttttctttggtctttcagagtatcttgatttccctccatattctcacaagcagaaagaaacaaatgactatccttaa |
2882835 |
T |
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| Q |
226 |
agatgtaagtggaatagtcaaacctcgcaggatgacacttcttcttggtcctccacgttctggcaagaccacacttcttttagctttgtcaggaaagctt |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
2882836 |
agatgtaagtggaatagtcaaacctcgcaggatgacactgcttcttggtcctccaagttctggaaagaccacacttcttttggctttgtcaggaaagctt |
2882935 |
T |
|
| Q |
326 |
gatcccaatctcaaggtgaaaatcattttctcttaatttcattaatatatactgttctctttcgctgttcatgaggtttcagttcagtaataaaaac |
422 |
Q |
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|||||||||||||||||||||| | ||||||||||||||| |||||||| ||||||||||| ||||||| | |||||||||||||| ||||||| |
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| T |
2882936 |
gatcccaatctcaaggtgaaaagaaatttctcttaatttcacaaatatatattgttctctttcactgttcacggggtttcagttcagtggtaaaaac |
2883032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 199 - 328
Target Start/End: Original strand, 2872696 - 2872825
Alignment:
| Q |
199 |
caaaaagaaacatatgactatcctcaaagatgtaagtggaatagtcaaacctcgcaggatgacacttcttcttggtcctccacgttctggcaagaccaca |
298 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||| |||| ||||||||||||||| |||| || ||||||||| |
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| T |
2872696 |
caaaaagaaacatatgactatccttaaagatgtaagtggaatagtcaaacctggtaggatggcactgcttcttggtcctccaagttccggaaagaccaca |
2872795 |
T |
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| Q |
299 |
cttcttttagctttgtcaggaaagcttgat |
328 |
Q |
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|||||||| || || | |||||||||||| |
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| T |
2872796 |
cttcttttggccttaactggaaagcttgat |
2872825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 224 - 330
Target Start/End: Complemental strand, 44226733 - 44226627
Alignment:
| Q |
224 |
aaagatgtaagtggaatagtcaaacctcgcaggatgacacttcttcttggtcctccacgttctggcaagaccacacttcttttagctttgtcaggaaagc |
323 |
Q |
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|||||||| || ||||| || |||||||| ||||||||||| ||| | |||||||| |||| || |||||||||||||||||||| || || ||||||| |
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| T |
44226733 |
aaagatgttagcggaatcgttaaacctcgtaggatgacactacttttaggtcctcctggttcaggaaagaccacacttcttttagccttatctggaaagc |
44226634 |
T |
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| Q |
324 |
ttgatcc |
330 |
Q |
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||||||| |
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| T |
44226633 |
ttgatcc |
44226627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 330
Target Start/End: Complemental strand, 44237531 - 44237425
Alignment:
| Q |
224 |
aaagatgtaagtggaatagtcaaacctcgcaggatgacacttcttcttggtcctccacgttctggcaagaccacacttcttttagctttgtcaggaaagc |
323 |
Q |
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|||||||| || ||||| || |||||||| ||||||||||| ||| | |||||||| |||| || |||||||| ||||| ||||| || || ||||||| |
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| T |
44237531 |
aaagatgttagcggaattgttaaacctcgtaggatgacactacttttaggtcctcctggttcaggaaagaccacgcttctgttagccttatctggaaagc |
44237432 |
T |
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| Q |
324 |
ttgatcc |
330 |
Q |
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||||||| |
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| T |
44237431 |
ttgatcc |
44237425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 328
Target Start/End: Complemental strand, 44214581 - 44214479
Alignment:
| Q |
226 |
agatgtaagtggaatagtcaaacctcgcaggatgacacttcttcttggtcctccacgttctggcaagaccacacttcttttagctttgtcaggaaagctt |
325 |
Q |
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|||||| |||||||| | |||||||| ||||||||| | || | |||||||| |||| || || |||||||| ||||||||||| |||||||||||| |
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| T |
44214581 |
agatgttagtggaattattaaacctcgtaggatgacattactcttaggtcctcctggttcaggaaaaaccacactacttttagctttatcaggaaagctt |
44214482 |
T |
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| Q |
326 |
gat |
328 |
Q |
| |
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||| |
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| T |
44214481 |
gat |
44214479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 342
Target Start/End: Complemental strand, 39592926 - 39592837
Alignment:
| Q |
253 |
caggatgacacttcttcttggtcctccacgttctggcaagaccacacttcttttagctttgtcaggaaagcttgatcccaatctcaaggt |
342 |
Q |
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|||||||||| | ||||| || |||||| ||||||| |||||||||||||| || |||||| | || || ||||||||||| || ||||| |
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| T |
39592926 |
caggatgacattgcttctgggacctccaagttctggaaagaccacacttctcttggctttggctggcaaacttgatcccaagctaaaggt |
39592837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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