View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_180 (Length: 231)
Name: NF10163A_low_180
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_180 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 28 - 211
Target Start/End: Original strand, 2803221 - 2803404
Alignment:
| Q |
28 |
ttttacccaaaaagttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaacctacaat |
127 |
Q |
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| T |
2803221 |
ttttacccaaaacgttaagacattaagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaacaatgtgagacttttaacctacaat |
2803320 |
T |
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| Q |
128 |
tgttgccgttggtgttggtatcacattttttcattgccttaggtaagaaacaaagtatatttaagggttatttcttatttgaaa |
211 |
Q |
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| T |
2803321 |
tgttgccgttggtgttggtatcacattttttcattgccttaggtaagaaacaaagtatatttaagggttatttcttatttgaaa |
2803404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 33561508 - 33561573
Alignment:
| Q |
30 |
ttacccaaaaagttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt |
95 |
Q |
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| T |
33561508 |
ttacccaaaaccttaagacaatgagtttatgggtcctctcacttataaagtgtttaacctccactt |
33561573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 42480611 - 42480533
Alignment:
| Q |
42 |
ttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaac |
120 |
Q |
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| T |
42480611 |
ttaagacatcgagtttatggatcatctcacttacatattgttcaacctccactttttcaaatagtatgagacttttaac |
42480533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 8482027 - 8481962
Alignment:
| Q |
30 |
ttacccaaaaagttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt |
95 |
Q |
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| T |
8482027 |
ttacccaaaatcttaaggcaatgagtttatgagtcatctcatttataaagtgttcaacctccactt |
8481962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 27226675 - 27226716
Alignment:
| Q |
54 |
gtttatgggtcatctcttttatagaatgttcaacctccactt |
95 |
Q |
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| T |
27226675 |
gtttatgggtcatctcatttataaaatgatcaacctccactt |
27226716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 10351226 - 10351325
Alignment:
| Q |
28 |
ttttacccaaaaag--ttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaacctaca |
125 |
Q |
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| T |
10351226 |
ttttacccaaaaatatttaagacaatgagtttatgggtcatttcacgtataaaatgttcaacctccgcttttttagccaatgtgagacttctaacttaca |
10351325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 260805 - 260846
Alignment:
| Q |
54 |
gtttatgggtcatctcttttatagaatgttcaacctccactt |
95 |
Q |
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| T |
260805 |
gtttatgggtcatctcatttataaaatgatcaacctccactt |
260846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 32930775 - 32930698
Alignment:
| Q |
43 |
taagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaac |
120 |
Q |
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|||||||||||||||||| |||||||| ||||| |||||||||| || |||| | |||| ||| | |||||| |||| |
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| T |
32930775 |
taagacattgagtttatgagtcatctcacttataaaatgttcaacttctacttttctaaacaatataagacttctaac |
32930698 |
T |
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