View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_181 (Length: 230)
Name: NF10163A_low_181
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_181 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0945 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 24546483 - 24546260
Alignment:
| Q |
7 |
tttaacgcccactcaaatcttcattccggtacaagatggtattttctgctttgcattcaccagcacttttagtaacgaatatggcatttatggaaaccat |
106 |
Q |
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| T |
24546483 |
tttaacgcccacccaaatcttcattccggtacaagatggtattttttgctttgcattcaccagcacttttagtaacgaatatggcatttatggaaaccat |
24546384 |
T |
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| Q |
107 |
gctcagtccaattatttgattgggtttgatttggaaaggcaagtggtatctttcaaggcgacagattgcaccaacgtacaagatgcaccttctattaatg |
206 |
Q |
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| T |
24546383 |
gctcagtcaaattatttgattgggtttgatttggaaaagcaactggtatctttcaaggcgacagattgcaccaacctacaagatgcaccttctattaatg |
24546284 |
T |
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| Q |
207 |
gggtgctccccaatgttctttctg |
230 |
Q |
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| T |
24546283 |
gggtgctccccaatgttctttctg |
24546260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 24539105 - 24538936
Alignment:
| Q |
8 |
ttaacgcccactcaaatcttcattccggtacaagatggtattttctgctttgcattcaccagcacttttagtaacgaatatggcatttatggaaaccatg |
107 |
Q |
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| T |
24539105 |
ttaacgcccgctcaaatgttcattccggtacaagatgataatttctgcttcgcagtcttcgacact---aatgaagaatatgtcacttatggaaactatg |
24539009 |
T |
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| Q |
108 |
ctcagtccaattatttgattgggtttgatttggaaaggcaagtggtatctttcaaggcgacagattgcaccaa |
180 |
Q |
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| T |
24539008 |
cccagtcaaactatttgattgggtttgatttggaaaggcaggtggtttctttcaaggcaacagattgcaccaa |
24538936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0945 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0945
Description:
Target: scaffold0945; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 196
Target Start/End: Original strand, 394 - 583
Alignment:
| Q |
7 |
tttaacgcccactcaaatcttcattccggtacaagatggtattttctgctttgcattcaccagcacttttagtaacgaatatggcatttatggaaaccat |
106 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| | || |
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| T |
394 |
tttaacgccaactcaaatcttcattccggtacaatatggtattttctgctttgcattcaccagctcttttagtaacgaatatggcacttatggaagctat |
493 |
T |
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| Q |
107 |
gctcagtccaattatttgattgggtttgatttggaaaggcaagtggtatctttcaaggcgacagattgcaccaacgtacaagatgcacct |
196 |
Q |
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| T |
494 |
gtgcagtcaaattatttgattgggtttgatttggaaaagcaagtggtttctttcaaggccacagattgcaccaacttacaagatgcacct |
583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 1667944 - 1667880
Alignment:
| Q |
116 |
aattatttgattgggtttgatttggaaaggcaagtggtatctttcaaggcgacagattgcaccaa |
180 |
Q |
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| T |
1667944 |
aattatttaataggatttgatttggatagacaagtggtctctttcaagccaacagattgtaccaa |
1667880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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