View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_19 (Length: 423)
Name: NF10163A_low_19
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_19 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 7 - 423
Target Start/End: Original strand, 4301853 - 4302267
Alignment:
| Q |
7 |
tatggtgttgcacttgggattgtatttgagaaaagaggaattgataaaacacaacccttgaaatttgtaactgatgaggtttatatagtggggggacaca |
106 |
Q |
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| T |
4301853 |
tatggtattgcacttgggattgtatttgagaaaagaggaattgataaaacacaacccttgaaatttgtaactgatgaggtttatatagtggggggacaca |
4301952 |
T |
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| Q |
107 |
tcagcagtaatgcagaagacaaaggaaatgtgttttcagttctttcaaaccaattttcagaattcatcatgttcctagctgccaaaacagtgttcgaatc |
206 |
Q |
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| T |
4301953 |
tcagcagtaatgcagaagacaaaggaaatgtgttttcagttctttcaaaccaattttcagaattcatcatgttcctagctgccaaaacagtgttcgaatc |
4302052 |
T |
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| Q |
207 |
cattgattacccagcggcaagtgagttcgtttgcaactattataggtaggttgtgtgggacaagaaaaacatcagacgatgtattttccaagcgtttgtt |
306 |
Q |
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| T |
4302053 |
cattgattacccagcggcaagtgagttcgtttgcaactattataggtaggttgtgtgggacaagaaaaacaccagacgatgtattttccaagcgtttgtt |
4302152 |
T |
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| Q |
307 |
gtcaagcctacaccatttgaagcaaattcatgacagatatcaccatatggacacattcctataagagaagttctaggtgcagtagtcttggttgataagg |
406 |
Q |
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| T |
4302153 |
gtcaagcctacaccatttgaagcaaattcatgacagatatcaccatatggacacattcc--taagagaagttctaggtgcagtagtcttggttgataagg |
4302250 |
T |
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| Q |
407 |
cttcaattcatatccta |
423 |
Q |
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| T |
4302251 |
cttcaattcatatccta |
4302267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 9e-37; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 226 - 356
Target Start/End: Complemental strand, 49100586 - 49100456
Alignment:
| Q |
226 |
agtgagttcgtttgcaactattataggtaggttgtgtgggacaagaaaaacatcagacgatgtattttccaagcgtttgttgtcaagcctacaccatttg |
325 |
Q |
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| T |
49100586 |
agtgagtttgtttgcaacgtttataggtaggctgcacgggacaagaaaaacaccagaggttgcattttccaagcgtctgttgtcaagcctataccatttg |
49100487 |
T |
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| Q |
326 |
aagcaaattcatgacagatatcaccatatgg |
356 |
Q |
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| T |
49100486 |
aagcaaattcatgacagatatcaccatatgg |
49100456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 49112546 - 49112454
Alignment:
| Q |
92 |
tagtggggggacacatcagcagtaatgcagaagacaaaggaaatgtgttttcagttctttcaaaccaattttcagaattcatcatgttcctag |
184 |
Q |
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| T |
49112546 |
tagtgggggggcacatcagcagtaatgcagaagacaaaggaaatgtgttttcagttccttctaaccaatatgcagaattcaacatgttcctag |
49112454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 49100762 - 49100660
Alignment:
| Q |
82 |
gaggtttatatagtggggggacacatcagcagtaatgcagaagacaaaggaaatgtgttttcagttctttcaaaccaattttcagaattcatcatgttcc |
181 |
Q |
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| T |
49100762 |
gaggtttatgtagtgggaggacacatcagcaggaatacagaagacaaaggaaatgttttttcagtcccttcaaaccaatatgcagaattcaacatgttcc |
49100663 |
T |
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| Q |
182 |
tag |
184 |
Q |
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||| |
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| T |
49100662 |
tag |
49100660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 205 - 356
Target Start/End: Complemental strand, 49112401 - 49112250
Alignment:
| Q |
205 |
tccattgattacccagcggcaagtgagttcgtttgcaactattataggtaggttgtgtgggacaagaaaaacatcagacgatgtattttccaagcgtttg |
304 |
Q |
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| T |
49112401 |
tccattgagcactcagcgccaagtgagttcatttgcaactattataggtagattagaagggacaagaaaaacatcagaggttgtgtttaccaagagtcta |
49112302 |
T |
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| Q |
305 |
ttgtcaagcctacaccatttgaagcaaattcatgacagatatcaccatatgg |
356 |
Q |
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| T |
49112301 |
ttgtcaagcctaaaccgtttgaagcaaaccaataacagatattaccatatgg |
49112250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 412
Target Start/End: Complemental strand, 49100306 - 49100251
Alignment:
| Q |
355 |
ggacacattcctataagagaagttctaggtgcagtagtcttggttgataaggcttcaa |
412 |
Q |
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| T |
49100306 |
ggacacattcctag--gagaaattctaggtgcagtagtcttggctgaaaaggcttcaa |
49100251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 5085365 - 5085423
Alignment:
| Q |
27 |
tgtatttgagaaaagaggaattgataaaacacaacccttgaaatttgtaactgatgagg |
85 |
Q |
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| T |
5085365 |
tgtattcgagaaaagaggaattgatgaaacacaacccttgaaatttgtaactgatgagg |
5085423 |
T |
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