View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10163A_low_195 (Length: 228)

Name: NF10163A_low_195
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10163A_low_195
NF10163A_low_195
[»] chr7 (7 HSPs)
chr7 (96-223)||(2786983-2787109)
chr7 (1-60)||(2787119-2787178)
chr7 (93-176)||(38372525-38372608)
chr7 (93-148)||(41677369-41677424)
chr7 (93-147)||(34922927-34922981)
chr7 (96-152)||(12473197-12473253)
chr7 (102-138)||(21249161-21249197)
[»] chr3 (12 HSPs)
chr3 (103-176)||(21296733-21296806)
chr3 (101-180)||(23555447-23555526)
chr3 (92-162)||(24842142-24842212)
chr3 (111-152)||(29830824-29830865)
chr3 (93-176)||(22809229-22809313)
chr3 (108-176)||(50022007-50022075)
chr3 (93-140)||(5129851-5129898)
chr3 (102-177)||(10272088-10272163)
chr3 (98-152)||(28623275-28623329)
chr3 (102-152)||(30499957-30500007)
chr3 (90-136)||(42956212-42956258)
chr3 (118-174)||(47520426-47520482)
[»] chr5 (12 HSPs)
chr5 (102-178)||(11163314-11163390)
chr5 (96-180)||(26002960-26003044)
chr5 (93-162)||(29922225-29922294)
chr5 (90-170)||(17128251-17128331)
chr5 (98-170)||(27981953-27982025)
chr5 (98-180)||(16721990-16722072)
chr5 (90-168)||(24030190-24030268)
chr5 (96-134)||(36106778-36106816)
chr5 (90-138)||(7984110-7984158)
chr5 (93-162)||(12467245-12467314)
chr5 (93-161)||(1473338-1473406)
chr5 (96-176)||(15413959-15414039)
[»] chr8 (9 HSPs)
chr8 (94-180)||(13131393-13131479)
chr8 (93-140)||(1089016-1089063)
chr8 (121-180)||(2019713-2019772)
chr8 (102-157)||(11988183-11988238)
chr8 (95-162)||(16972395-16972462)
chr8 (93-175)||(32131408-32131490)
chr8 (90-139)||(13265488-13265537)
chr8 (96-160)||(19327850-19327914)
chr8 (102-178)||(42102072-42102148)
[»] chr4 (15 HSPs)
chr4 (96-178)||(18424316-18424398)
chr4 (96-139)||(46650275-46650318)
chr4 (102-176)||(29877606-29877680)
chr4 (90-171)||(43740108-43740189)
chr4 (98-146)||(22303093-22303141)
chr4 (98-178)||(47202791-47202871)
chr4 (122-178)||(48721942-48721998)
chr4 (93-176)||(23297405-23297488)
chr4 (102-176)||(43415334-43415408)
chr4 (98-152)||(46176019-46176073)
chr4 (93-178)||(948037-948122)
chr4 (111-180)||(10794963-10795032)
chr4 (96-169)||(29996678-29996751)
chr4 (113-174)||(31022371-31022432)
chr4 (94-162)||(8130469-8130537)
[»] chr6 (6 HSPs)
chr6 (98-178)||(32615455-32615535)
chr6 (100-177)||(21871193-21871269)
chr6 (102-162)||(28758366-28758426)
chr6 (102-152)||(4272373-4272423)
chr6 (102-152)||(22816630-22816680)
chr6 (93-178)||(21891374-21891459)
[»] chr2 (5 HSPs)
chr2 (93-170)||(33321439-33321516)
chr2 (93-178)||(4090454-4090539)
chr2 (102-147)||(12683651-12683696)
chr2 (119-176)||(17797329-17797386)
chr2 (96-152)||(34913429-34913485)
[»] chr1 (8 HSPs)
chr1 (111-180)||(16225472-16225541)
chr1 (90-162)||(26435208-26435279)
chr1 (93-176)||(1265729-1265812)
chr1 (102-177)||(35897668-35897743)
chr1 (91-138)||(41003392-41003439)
chr1 (96-177)||(15631870-15631951)
chr1 (93-170)||(35590103-35590180)
chr1 (90-175)||(39941343-39941423)
[»] scaffold0100 (1 HSPs)
scaffold0100 (98-152)||(38493-38547)
[»] scaffold0015 (1 HSPs)
scaffold0015 (113-179)||(48535-48601)


Alignment Details
Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 2787109 - 2786983
Alignment:
Q  96 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggacggttacttatttaca 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  2787109 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtata-tctaaaaaataagtcaattcaaacggacggttacttatttaca 2787011  T
Q  196 aaatggatttgattggaacttgcgtgtt 223  Q
    |||||||||||||||||||||| |||||    
T  2787010 aaatggatttgattggaacttgagtgtt 2786983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 2787178 - 2787119
Alignment:
Q  1 tatcaaaataatcaatgtgaagtttatgtgatttaatattttatgatattttttgtatgc 60  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||    
T  2787178 tatcaaaataatcaatgtgaagtttatgtaatttaatattttgtgatatttttcgtatgc 2787119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 38372608 - 38372525
Alignment:
Q  93 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 176  Q
    |||||||| |||||||| |||||| | | |||||||||||||||||  ||||||| |||| || |||||| ||||||| |||||    
T  38372608 ttgacaaacttatgaataatacataagagcttatttatttgcataagctgttttgcataagctcaaaaataagtcaatccaaac 38372525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 41677424 - 41677369
Alignment:
Q  93 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgt 148  Q
    |||||||| |||||||| |||||| |||| ||||||||||||||||  ||||||||    
T  41677424 ttgacaaacttatgaataatacataaaaatttatttatttgcataagttgttttgt 41677369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 34922981 - 34922927
Alignment:
Q  93 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttg 147  Q
    |||||||| |||||||| |||||| ||| |||||||||||||||||  |||||||    
T  34922981 ttgacaaacttatgaataatacataaaagcttatttatttgcataagttgttttg 34922927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 12473253 - 12473197
Alignment:
Q  96 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 152  Q
    ||||| |||||||| |||||| ||||||||||| |||||||||  ||||||| ||||    
T  12473253 acaaacttatgaataatacataaaaacttatttgtttgcataagttgttttgcataa 12473197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 21249197 - 21249161
Alignment:
Q  102 ttatgaatcatacatgaaaacttatttatttgcataa 138  Q
    |||||||| |||||| |||||||||||||||||||||    
T  21249197 ttatgaataatacataaaaacttatttatttgcataa 21249161  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 21296806 - 21296733
Alignment:
Q  103 tatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 176  Q
    ||||||| ||| || |||||||||||||||||||||| ||||||| ||||||| |||||| ||||||| |||||    
T  21296806 tatgaataatagataaaaacttatttatttgcataaattgttttgcataatctcaaaaataagtcaatccaaac 21296733  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 23555526 - 23555447
Alignment:
Q  101 tttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 180  Q
    |||| |||| |||||| ||| |||||||||||||||||| ||||| |||||| || |||||| || |||| |||||||||    
T  23555526 tttacgaataatacataaaagcttatttatttgcataaactgtttcgtataagctcaaaaataagccaatccaaacggac 23555447  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 24842142 - 24842212
Alignment:
Q  92 tttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 162  Q
    ||||||||| |||||||| |||||| |||| ||||||||||||||||  |||||| ||||| || ||||||    
T  24842142 tttgacaaacttatgaataatacataaaaatttatttatttgcataagttgttttttataaccttaaaaat 24842212  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 29830824 - 29830865
Alignment:
Q  111 atacatgaaaacttatttatttgcataaaatgttttgtataa 152  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  29830824 atacataaaaacttatttatttgcataaactgttttgtataa 29830865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 22809229 - 22809313
Alignment:
Q  93 ttgacaaatttatgaatcatacatgaaaa-cttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 176  Q
    |||||||  |||||||| ||| || |||| |||||||||||||||||  ||||||| |||| || |||||| |||||||||||||    
T  22809229 ttgacaagcttatgaataatatataaaaagcttatttatttgcataagctgttttgcataacctcaaaaataagtcaattcaaac 22809313  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 50022007 - 50022075
Alignment:
Q  108 atcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 176  Q
    ||||||||| ||| |||||||||||||||||| ||||||| |||||||  ||||| || |||| |||||    
T  50022007 atcatacatcaaagcttatttatttgcataaactgttttgcataatctctaaaataagccaatccaaac 50022075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 5129851 - 5129898
Alignment:
Q  93 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaa 140  Q
    |||||||  |||||||| |||||| |||||||||||||||||||||||    
T  5129851 ttgacaagcttatgaataatacattaaaacttatttatttgcataaaa 5129898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 10272163 - 10272088
Alignment:
Q  102 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacg 177  Q
    |||||||| |||||| |||  |||||||||||||| |  ||||||| |||| ||||||||| ||||||| ||||||    
T  10272163 ttatgaataatacataaaagtttatttatttgcatgagttgttttgcataagctaaaaaataagtcaatccaaacg 10272088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 28623275 - 28623329
Alignment:
Q  98 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 152  Q
    |||||||| ||| |||||| |||||||||||||||||||||  |||||| |||||    
T  28623275 aaatttataaataatacataaaaacttatttatttgcataagttgttttctataa 28623329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 30500007 - 30499957
Alignment:
Q  102 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 152  Q
    |||| ||| |||||| |||| ||||||||||||||||| ||||||||||||    
T  30500007 ttataaataatacataaaaatttatttatttgcataaactgttttgtataa 30499957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 42956212 - 42956258
Alignment:
Q  90 actttgacaaatttatgaatcatacatgaaaacttatttatttgcat 136  Q
    |||| ||||| ||||||||| |||||| |||||||||||||||||||    
T  42956212 acttcgacaagtttatgaataatacataaaaacttatttatttgcat 42956258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 47520482 - 47520426
Alignment:
Q  118 aaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaa 174  Q
    ||||||||||||| |||||||| | |||| ||||| || |||||| |||||||||||    
T  47520482 aaaacttatttatatgcataaattattttttataaactcaaaaataagtcaattcaa 47520426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 11163314 - 11163390
Alignment:
Q  102 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 178  Q
    ||||||||||||||| |||||||||| |||| |||||  ||||||| |||| ||||||||| ||||||| |||||||    
T  11163314 ttatgaatcatacataaaaacttattgatttacataagctgttttgcataagctaaaaaataagtcaatccaaacgg 11163390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 26003044 - 26002960
Alignment:
Q  96 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 180  Q
    ||||| |||| ||| |||||| |||||||||||||||||||||| |||||||||||| ||  ||||| ||| ||| |||||||||    
T  26003044 acaaacttataaataatacataaaaacttatttatttgcataaactgttttgtataagctctaaaataagttaatccaaacggac 26002960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 29922225 - 29922294
Alignment:
Q  93 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 162  Q
    |||||||  |||||||| |||||| |||||||||||||||||||||| ||||||| |||| || ||||||    
T  29922225 ttgacaagcttatgaataatacataaaaacttatttatttgcataaactgttttgcataagctcaaaaat 29922294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 170
Target Start/End: Complemental strand, 17128331 - 17128251
Alignment:
Q  90 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaat 170  Q
    ||||||| || ||||||||| |||||| ||| |||||||||||||||||  ||||||| |||| || |||||| |||||||    
T  17128331 actttgataagtttatgaataatacataaaagcttatttatttgcataagctgttttgcataagctcaaaaataagtcaat 17128251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 27981953 - 27982025
Alignment:
Q  98 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaat 170  Q
    |||||||||||| |||||| |||| |||||||||| ||||| |||||||||||||  | |||||| |||||||    
T  27981953 aaatttatgaataatacataaaaatttatttattttcataagatgttttgtataagttcaaaaataagtcaat 27982025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 16722072 - 16721990
Alignment:
Q  98 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 180  Q
    |||||||| ||| |||||| |||||||||||||||||||||| | |||| ||||| ||  ||||| ||  |||||||||||||    
T  16722072 aaatttataaataatacataaaaacttatttatttgcataaattattttctataagctttaaaataagctaattcaaacggac 16721990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 24030268 - 24030190
Alignment:
Q  90 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtca 168  Q
    ||||||||||  |||||||| |||||| ||| |||||||||||| ||||  |||||||||||| || |||||| |||||    
T  24030268 actttgacaagcttatgaataatacataaaagcttatttatttggataagctgttttgtataagcttaaaaataagtca 24030190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 36106778 - 36106816
Alignment:
Q  96 acaaatttatgaatcatacatgaaaacttatttatttgc 134  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  36106778 acaaatttatgaatcatacataaaaacttatttatttgc 36106816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 7984158 - 7984110
Alignment:
Q  90 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataa 138  Q
    ||||||||||| |||||||| |||||| |||||||| ||||||||||||    
T  7984158 actttgacaaacttatgaataatacataaaaacttagttatttgcataa 7984110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 162
Target Start/End: Complemental strand, 12467314 - 12467245
Alignment:
Q  93 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 162  Q
    |||||||  |||||||| |||||| ||| ||||||||||||||||| || ||||| |||| || ||||||    
T  12467314 ttgacaagcttatgaataatacataaaagcttatttatttgcataacattttttgaataaactcaaaaat 12467245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 1473406 - 1473338
Alignment:
Q  93 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaa 161  Q
    |||||||  |||||||| |||||| ||| |||||||||||||||||  |||| ||||||| || |||||    
T  1473406 ttgacaagcttatgaataatacataaaagcttatttatttgcataagttgttctgtataagctcaaaaa 1473338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 15414039 - 15413959
Alignment:
Q  96 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 176  Q
    ||||| |||| ||| |||||| || ||||||||||||||||||  ||||||| |||| ||  ||||| ||||||| |||||    
T  15414039 acaaacttatcaataatacattaatacttatttatttgcataagctgttttgcataagctctaaaataagtcaatccaaac 15413959  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 13131479 - 13131393
Alignment:
Q  94 tgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 180  Q
    ||||||| |||||||| |||||| ||| |||||||||||||||||  ||||||| |||| ||||||||| ||  ||| |||||||||    
T  13131479 tgacaaacttatgaataatacataaaagcttatttatttgcataatttgttttgcataagctaaaaaataagcaaatccaaacggac 13131393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 1089063 - 1089016
Alignment:
Q  93 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaa 140  Q
    |||||||  |||||||| |||||| |||||||||||||||||||||||    
T  1089063 ttgacaagcttatgaataatacattaaaacttatttatttgcataaaa 1089016  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 2019713 - 2019772
Alignment:
Q  121 acttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 180  Q
    |||||||||||||||||| |||||||| |||| ||  ||||| ||||||| |||||||||    
T  2019713 acttatttatttgcataagatgttttgcataagctctaaaataagtcaatccaaacggac 2019772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 11988238 - 11988183
Alignment:
Q  102 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaa 157  Q
    |||| ||| |||||| |||||||||||||||||||||| |||||| ||||| ||||    
T  11988238 ttataaataatacataaaaacttatttatttgcataaattgttttatataagctaa 11988183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 16972395 - 16972462
Alignment:
Q  95 gacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 162  Q
    |||||| |||||||| ||||||  || |||||||||||||| ||| ||||||| |||| |||||||||    
T  16972395 gacaaacttatgaataatacatacaagcttatttatttgcaaaaattgttttgcataagctaaaaaat 16972462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 32131490 - 32131408
Alignment:
Q  93 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaa 175  Q
    |||||||| ||| |||| || ||| ||| |||||||||||||||||  ||||||| |||| || |||||| ||||||| ||||    
T  32131490 ttgacaaacttaggaataatgcataaaagcttatttatttgcataagctgttttgcataagctcaaaaataagtcaatccaaa 32131408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 13265537 - 13265488
Alignment:
Q  90 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaa 139  Q
    ||||||||||  |||||||| |||||| ||| ||||||||||||||||||    
T  13265537 actttgacaagcttatgaataatacataaaagcttatttatttgcataaa 13265488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 19327914 - 19327850
Alignment:
Q  96 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaa 160  Q
    ||||| |||||||| |||||| |||  ||||||||||||||||  ||||||| |||| |||||||    
T  19327914 acaaacttatgaataatacataaaagtttatttatttgcataagttgttttgcataagctaaaaa 19327850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 42102148 - 42102072
Alignment:
Q  102 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 178  Q
    |||| ||| |||||| |||||||||||||||||||||  |||||| ||||| ||  ||||| ||| ||| |||||||    
T  42102148 ttataaataatacataaaaacttatttatttgcataagctgttttatataagctctaaaataagttaatccaaacgg 42102072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 18424316 - 18424398
Alignment:
Q  96 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 178  Q
    |||| ||||||||| |||||| ||| |||||||||||| ||||| ||||||| |||| || ||||||  ||||||||||||||    
T  18424316 acaagtttatgaataatacataaaagcttatttatttgtataaattgttttgcataagctcaaaaatatgtcaattcaaacgg 18424398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 46650318 - 46650275
Alignment:
Q  96 acaaatttatgaatcatacatgaaaacttatttatttgcataaa 139  Q
    |||||||||||||| |||||||||| ||||||||||||||||||    
T  46650318 acaaatttatgaataatacatgaaagcttatttatttgcataaa 46650275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 29877680 - 29877606
Alignment:
Q  102 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 176  Q
    |||||||| |||||| ||| |||||||||||||||||| ||||||| |||| || |||||| || |||| |||||    
T  29877680 ttatgaataatacataaaagcttatttatttgcataaattgttttgcataagctcaaaaataagccaatccaaac 29877606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 43740108 - 43740189
Alignment:
Q  90 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaatt 171  Q
    |||| ||||| ||||||||| |||  | ||||||||||||||| |||||| ||||||||||||  | |||||| ||||||||    
T  43740108 acttagacaagtttatgaataatatgtaaaaacttatttattttcataaattgttttgtataaatttaaaaataagtcaatt 43740189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 22303141 - 22303093
Alignment:
Q  98 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgtttt 146  Q
    |||||||| ||| |||||| |||||||||||||||||||||| ||||||    
T  22303141 aaatttataaataatacataaaaacttatttatttgcataaactgtttt 22303093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 178
Target Start/End: Complemental strand, 47202871 - 47202791
Alignment:
Q  98 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 178  Q
    |||||||| | | |||||| |||||||||||||||||||||  |||||| ||||| ||| ||||| ||| ||| |||||||    
T  47202871 aaatttataagtaatacataaaaacttatttatttgcataagctgttttatataagctataaaataagttaatccaaacgg 47202791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 48721942 - 48721998
Alignment:
Q  122 cttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 178  Q
    |||||||||||| ||||| | |||| ||||| ||||||||| |||||||||||||||    
T  48721942 cttatttatttgtataaattattttttataagctaaaaaataagtcaattcaaacgg 48721998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 23297488 - 23297405
Alignment:
Q  93 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 176  Q
    |||||||| |||||||| |||||| ||| |||||||||||||||||  | ||||| |||| || |||||| || |||| |||||    
T  23297488 ttgacaaacttatgaataatacataaaagcttatttatttgcataagctattttgcataagctcaaaaataagccaatccaaac 23297405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 43415334 - 43415408
Alignment:
Q  102 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 176  Q
    |||||||| |||||| |||||||||||||||||| ||  ||||||   ||| || |||||| |||||||||||||    
T  43415334 ttatgaataatacataaaaacttatttatttgcagaagttgttttacttaagctcaaaaataagtcaattcaaac 43415408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 46176019 - 46176073
Alignment:
Q  98 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 152  Q
    |||||||| ||| |||||| |||||||||||||||||||||  |||||| |||||    
T  46176019 aaatttataaataatacataaaaacttatttatttgcataagctgttttatataa 46176073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 948122 - 948037
Alignment:
Q  93 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 178  Q
    |||||||| |||||||| |||||| ||| ||||||||||| |||||  | ||||| |||| ||||||| | ||||| | |||||||    
T  948122 ttgacaaagttatgaataatacataaaagcttatttattttcataagctattttgcataagctaaaaagtaagtcattccaaacgg 948037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 10794963 - 10795032
Alignment:
Q  111 atacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 180  Q
    |||||| ||||||||||||||| || ||  ||||||| |||| ||  ||||| |||||||||||||||||    
T  10794963 atacataaaaacttatttatttacacaagctgttttgcataagctctaaaataagtcaattcaaacggac 10795032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 29996678 - 29996751
Alignment:
Q  96 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaa 169  Q
    ||||| |||||||| ||| || ||| |||||||||||||||||| ||||||| | || || |||||| ||||||    
T  29996678 acaaacttatgaataatatataaaagcttatttatttgcataaattgttttgcaaaaactcaaaaataagtcaa 29996751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 31022432 - 31022371
Alignment:
Q  113 acatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaa 174  Q
    |||| ||||||||||||||||||| | |||||||| |||| || |||||| || ||||||||    
T  31022432 acataaaaacttatttatttgcatgagatgttttgcataagctcaaaaataagacaattcaa 31022371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 8130537 - 8130469
Alignment:
Q  94 tgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 162  Q
    ||||||| |||||||| || ||| ||| |||||||||||||||||  ||||||| |||  |||||||||    
T  8130537 tgacaaacttatgaataatgcataaaagcttatttatttgcataagctgttttgcatatgctaaaaaat 8130469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 32615455 - 32615535
Alignment:
Q  98 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 178  Q
    |||||||| ||| |||||| |||||||||||||||||||||  |||||| ||||| ||| ||||| ||| ||| |||||||    
T  32615455 aaatttataaataatacataaaaacttatttatttgcataagctgttttatataagctataaaataagttaatccaaacgg 32615535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 21871269 - 21871193
Alignment:
Q  100 atttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacg 177  Q
    |||||||||||| |||| |||||||||||||||| ||||| | ||||  |||| ||||||||| ||||||| ||||||    
T  21871269 atttatgaatca-acataaaaacttatttatttgtataaactatttttcataagctaaaaaataagtcaatccaaacg 21871193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 28758366 - 28758426
Alignment:
Q  102 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 162  Q
    |||||||| |||||| |||| ||||||||||||||||| |||| ||||||  |||||||||    
T  28758366 ttatgaataatacataaaaatttatttatttgcataaactgttctgtatagactaaaaaat 28758426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 4272423 - 4272373
Alignment:
Q  102 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 152  Q
    ||||| || |||||| |||| ||||||||||||||||| ||||||||||||    
T  4272423 ttatgtataatacataaaaagttatttatttgcataaattgttttgtataa 4272373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 22816630 - 22816680
Alignment:
Q  102 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 152  Q
    ||||||||  ||||| |||||||||||||||||||||| |||||| |||||    
T  22816630 ttatgaatattacataaaaacttatttatttgcataaattgttttttataa 22816680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 21891374 - 21891459
Alignment:
Q  93 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 178  Q
    |||||||  |||||||| ||| || |||||||||||||||||||||  | || || |||| || |||||||| ||||| |||||||    
T  21891374 ttgacaagcttatgaataatatatcaaaacttatttatttgcataagctattctgcataagctcaaaaattaatcaatccaaacgg 21891459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 33321439 - 33321516
Alignment:
Q  93 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaat 170  Q
    |||||||  |||||| | |||||| |||||||| ||||||||||||  ||||||| |||| ||||||||| |||||||    
T  33321439 ttgacaagcttatgagtaatacataaaaacttaattatttgcataagttgttttgcataagctaaaaaataagtcaat 33321516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 4090539 - 4090454
Alignment:
Q  93 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 178  Q
    |||||||  |||||||| |||||| |||  ||||||||||||||||  ||||||| |||| || |||||| || ||||||| ||||    
T  4090539 ttgacaagattatgaataatacatcaaagtttatttatttgcataagctgttttgcataagctcaaaaataagccaattcagacgg 4090454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 12683651 - 12683696
Alignment:
Q  102 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttg 147  Q
    |||||||| |||||| |||||||||||||||||||||  |||||||    
T  12683651 ttatgaataatacattaaaacttatttatttgcataatctgttttg 12683696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 17797329 - 17797386
Alignment:
Q  119 aaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 176  Q
    ||||||||||||||||||||| ||||||| ||||  |||||||| | ||||| |||||    
T  17797329 aaacttatttatttgcataaactgttttgcataagttaaaaaataaatcaatccaaac 17797386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 34913429 - 34913485
Alignment:
Q  96 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 152  Q
    ||||| |||||||| |||||| ||| |||||||||||||||||  ||||||| ||||    
T  34913429 acaaacttatgaataatacataaaagcttatttatttgcataagctgttttgcataa 34913485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 16225541 - 16225472
Alignment:
Q  111 atacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 180  Q
    |||||| ||||||||||||||| |||||| ||||||| |||| ||  ||||| ||||||| |||||||||    
T  16225541 atacataaaaacttatttatttacataaactgttttgcataagctctaaaataagtcaatccaaacggac 16225472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 26435208 - 26435279
Alignment:
Q  90 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 162  Q
    ||||||||||| |||  ||| |||||| |||||||||||||||||||||  |||||||||||| || ||||||    
T  26435208 actttgacaaacttaaaaataatacat-aaaacttatttatttgcataagctgttttgtataagctcaaaaat 26435279  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 1265729 - 1265812
Alignment:
Q  93 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 176  Q
    |||||||| |||||||| |||||| ||| ||||| | |||| ||||  ||||||| |||| || |||||| |||||||||||||    
T  1265729 ttgacaaaattatgaataatacataaaatcttatctgtttgtataagttgttttgcataagctcaaaaataagtcaattcaaac 1265812  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 35897668 - 35897743
Alignment:
Q  102 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacg 177  Q
    |||||||| ||| || |||||||||||||||||||||  ||||||| |||| || |||||| | ||||| ||||||    
T  35897668 ttatgaataataaataaaaacttatttatttgcataagttgttttgcataaccttaaaaataaatcaatccaaacg 35897743  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 41003439 - 41003392
Alignment:
Q  91 ctttgacaaatttatgaatcatacatgaaaacttatttatttgcataa 138  Q
    |||||||||| |||| ||| |||||| |||||||||||||||||||||    
T  41003439 ctttgacaaacttataaataatacataaaaacttatttatttgcataa 41003392  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 15631951 - 15631870
Alignment:
Q  96 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacg 177  Q
    ||||| |||| ||| |||||| |||||||||||||||| ||||  |||||||||||| ||  ||||| | | ||||||||||    
T  15631951 acaaacttataaataatacataaaaacttatttatttgtataagttgttttgtataagctctaaaataaattaattcaaacg 15631870  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 35590180 - 35590103
Alignment:
Q  93 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaat 170  Q
    |||||||  |||||||  |||||| ||| |||||||||||||||||  ||||||  |||| ||||||||| |||||||    
T  35590180 ttgacaagcttatgaactatacataaaagcttatttatttgcataagttgttttacataagctaaaaaataagtcaat 35590103  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 39941423 - 39941343
Alignment:
Q  90 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaa 175  Q
    ||||||||||  |||||||| |||||| |||||| ||||||||||     ||||||||| ||| || |||||| ||||||||||||    
T  39941423 actttgacaagcttatgaataatacataaaaactcatttatttgc-----atgttttgtttaagctgaaaaataagtcaattcaaa 39941343  T

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Target: scaffold0100 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 38493 - 38547
Alignment:
Q  98 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 152  Q
    |||||||| ||| |||||| |||||||||||||||||||||| | |||| |||||    
T  38493 aaatttataaataatacataaaaacttatttatttgcataaactattttatataa 38547  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 48601 - 48535
Alignment:
Q  113 acatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgga 179  Q
    |||| ||| |||||||||||||||||  | |||||||||| ||||||||| |||||||  |||||||    
T  48601 acataaaagcttatttatttgcataagctattttgtataagctaaaaaataagtcaatcaaaacgga 48535  T

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