View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_20 (Length: 422)
Name: NF10163A_low_20
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 7 - 410
Target Start/End: Complemental strand, 4322919 - 4322516
Alignment:
| Q |
7 |
ttttctttgtctaatttctaattcacatttttctccttctcattttcattacaatgttatttcagttttgactaaatcacttatttttcattcattttta |
106 |
Q |
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| T |
4322919 |
ttttctttgtctaatttctaattcacatttttctccttctcattttcattacaatgttatttcagttttgactaaatcacttatgttttattcattttta |
4322820 |
T |
|
| Q |
107 |
tcattggatcgtcacttgaacagtattatttggactgtgaaatggaggaggaaagatacgagatattgaaggaccttggttctggaaactttggagtgac |
206 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4322819 |
tcattggatcgtcaattgaacagtattatttggactgtgaaatggaggaggaaagatacgagatattgaaggaccttggttctggaaactttggagtgac |
4322720 |
T |
|
| Q |
207 |
taggttggctaaagacaagaagacaggagaacttgttgctatcaaatacattgaaagaggatataaggtcacgtatattttcttcatatatcttaattaa |
306 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4322719 |
taggttggctaaagacaaaaagacaggagaacttgttgctatcaaatacattgaaagaggatataaggtcaagtatattttcttcatatatcttaattaa |
4322620 |
T |
|
| Q |
307 |
ataaagcttcatcgttgcatgtacattttacttgtttgataagaattaatcaaattttttctgctaaataaaaggattaattcgatattttgattttgaa |
406 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4322619 |
ataaagcttatgcgttgcatgtacattttacttgtttgataagaattaataaaaaaaattctgctaaataaaaggattaattcgatattctgattttgaa |
4322520 |
T |
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| Q |
407 |
tatt |
410 |
Q |
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|||| |
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| T |
4322519 |
tatt |
4322516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 157 - 257
Target Start/End: Original strand, 41124398 - 41124498
Alignment:
| Q |
157 |
gaaagatacgagatattgaaggaccttggttctggaaactttggagtgactaggttggctaaagacaagaagacaggagaacttgttgctatcaaataca |
256 |
Q |
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|||||||| ||| ||||||||| |||||||||||||| ||||| || ||||||||||||||||||| || || || |||||||||||| ||||||||| |
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| T |
41124398 |
gaaagatatgagccattgaaggaacttggttctggaaattttggtgttgctaggttggctaaagacaaaaatactggggaacttgttgctctcaaataca |
41124497 |
T |
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| Q |
257 |
t |
257 |
Q |
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| |
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| T |
41124498 |
t |
41124498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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