View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_200 (Length: 225)
Name: NF10163A_low_200
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_200 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 34042803 - 34043020
Alignment:
| Q |
1 |
ttcttctcccgctttgtgtttcatgagaaatttcttttattctgttattaatttgttgttgatttcatttccgaatcatatcgttgttgtgctgattttt |
100 |
Q |
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| T |
34042803 |
ttcttctcccgctttgtgtttcatgagaaatttcttttattctgttattaatttgttgttgatttcatttccgaatcatatcgttgttgtgctgattttt |
34042902 |
T |
|
| Q |
101 |
tgttacattcagctctcgaggagtaatgatcctgattcttttattccgtaccttgcgatgaactatttcgatcgcttcttatcgcagcacaaattgaatc |
200 |
Q |
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| T |
34042903 |
tgttacattcagctctcgaggagtgatgatcctgattcttttattccgtaccttgcgatgaactatttcgatcgcttcttatcgcagcacaaattgaatc |
34043002 |
T |
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| Q |
201 |
tggaggtaatattcttcg |
218 |
Q |
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||||||||||||| |||| |
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| T |
34043003 |
tggaggtaatattgttcg |
34043020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 45 - 218
Target Start/End: Complemental strand, 4046366 - 4046193
Alignment:
| Q |
45 |
ttattaatttgttgttgatttcatttccgaatcatatcgttgttgtgctgattttttgttacattcagctctcgaggagtaatgatcctgattcttttat |
144 |
Q |
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|||| ||||||| |||||||| |||| ||||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |
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| T |
4046366 |
ttatcaatttgtagttgatttagtttctgaatcatatggttgctgtgctgattttttgttacattcagttctcgaggagtgatgatcctgattcatttat |
4046267 |
T |
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| Q |
145 |
tccgtaccttgcgatgaactatttcgatcgcttcttatcgcagcacaaattgaatctggaggtaatattcttcg |
218 |
Q |
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| T |
4046266 |
tccgtaccttgtgatgaactatttcaatcttttcaaatcgcagcacaaattgaatctggaggtaatattgttcg |
4046193 |
T |
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