View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_202 (Length: 224)
Name: NF10163A_low_202
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_202 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 1329451 - 1329238
Alignment:
| Q |
1 |
gacaaattccaatattcttggaccatccagagaagaggtctagctcatgaaactgtgttccaatacgacagaaaatgtcatacaccttgatacagtctgc |
100 |
Q |
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| T |
1329451 |
gacaaattccaatattcttggaccatccatagaagaggtctagctcatcaaactgttttccaatacgacagaaaatgtcatacaccttgatacagtctgc |
1329352 |
T |
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| Q |
101 |
gacatccatgtcaggaaaacggtcgattaagatgctcaatatttctgatatgtcgtaatatgattgaaaactctccttcacaattggataaagagccact |
200 |
Q |
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| T |
1329351 |
gacatccatgtcagaaaaacggtcgattaagatgctcaatatttctgatatgtcgtaatatgattgaaaactctccttcacaattggataaagagccact |
1329252 |
T |
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| Q |
201 |
atcacaattctatg |
214 |
Q |
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|||||||||||||| |
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| T |
1329251 |
atcacaattctatg |
1329238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 1924897 - 1924841
Alignment:
| Q |
158 |
atatgattgaaaactctccttcacaattggataaagagccactatcacaattctatg |
214 |
Q |
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| T |
1924897 |
atatgtttgaaaactctccttcacaattgggtagagtgccactatcaccattctatg |
1924841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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