View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_203 (Length: 223)
Name: NF10163A_low_203
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_203 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42445267 - 42445046
Alignment:
| Q |
1 |
gcctatggcagtgctatcattgaaaaatggaggaggctcacttagaccaagtgatatcgatattacatccaccccatcctccacagctgcatctaatgcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42445267 |
gcctatggcagtgctatcattgaaaaatggaggaggctcacttagaccaagtgatatcgatattacatccacaccatcctccacagctgcatctaatgcc |
42445168 |
T |
|
| Q |
101 |
gcaagtatattactctcggcacagtcttctccaaagcacactttgtaaattgctaggtgagcatgaggagccatccctgctgccgtacctttagcatttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445167 |
gcaagtatattactctcggcacagtcttctccaaagcacactttgtaaattgctaggtgagcatgaggagccatccctgctgccgtacctttagcatttc |
42445068 |
T |
|
| Q |
201 |
ctagcacttctgcattgtcgac |
222 |
Q |
| |
|
|||||||||||||||| ||||| |
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|
| T |
42445067 |
ctagcacttctgcattttcgac |
42445046 |
T |
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