View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_208 (Length: 222)
Name: NF10163A_low_208
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_208 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4082636 - 4082858
Alignment:
| Q |
1 |
atcaactaaattttccaagtttagactctctctttcccctacatgtttccttccctacaactccaaaatttgagcaaccatatacggttttcttnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4082636 |
atcaactaaattttccaagtttagactctctctttcccctacatgtttccttccctacaactccaaaatttgagcaaccatatacggttttcttcaacaa |
4082735 |
T |
|
| Q |
101 |
nnnnnnnnnnnnnnnnnnntttccatttgatcatttcccaaaac--catatatatttctataggaatttgaattccccagacacccttcaatcatcattt |
198 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4082736 |
accaaaccaaaaaacaaaatttccatttgatcatttcccaaaactatatatatatttctataggaatttcaattccccagacacccttcaatcatcattt |
4082835 |
T |
|
| Q |
199 |
gccaagaaacaaaaccattaaat |
221 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
4082836 |
gccaagaaacaaaaccattaaat |
4082858 |
T |
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