View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10163A_low_213 (Length: 221)

Name: NF10163A_low_213
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10163A_low_213
NF10163A_low_213
[»] chr8 (46 HSPs)
chr8 (18-210)||(10015248-10015441)
chr8 (29-210)||(5689451-5689633)
chr8 (21-210)||(1345178-1345367)
chr8 (29-166)||(40321260-40321398)
chr8 (21-208)||(3303474-3303666)
chr8 (29-213)||(41366417-41366602)
chr8 (21-207)||(43036595-43036786)
chr8 (29-210)||(6599153-6599331)
chr8 (29-210)||(6674606-6674784)
chr8 (18-169)||(1292311-1292463)
chr8 (19-210)||(19491505-19491696)
chr8 (21-210)||(30143512-30143706)
chr8 (21-210)||(4743029-4743210)
chr8 (21-210)||(15212958-15213153)
chr8 (30-170)||(18105917-18106058)
chr8 (21-210)||(4731830-4732024)
chr8 (21-135)||(18141990-18142105)
chr8 (47-170)||(27811480-27811605)
chr8 (35-210)||(12702433-12702614)
chr8 (47-210)||(4733908-4734073)
chr8 (21-170)||(42498367-42498522)
chr8 (21-97)||(30291780-30291856)
chr8 (47-166)||(33352352-33352473)
chr8 (21-170)||(44304028-44304182)
chr8 (21-187)||(34254155-34254326)
chr8 (50-210)||(3050927-3051090)
chr8 (21-187)||(17982826-17982997)
chr8 (21-187)||(34256331-34256502)
chr8 (24-166)||(3073723-3073867)
chr8 (21-170)||(1746060-1746214)
chr8 (28-170)||(8153966-8154107)
chr8 (21-170)||(19945200-19945354)
chr8 (23-210)||(8965494-8965685)
chr8 (21-187)||(31218430-31218601)
chr8 (158-215)||(26287710-26287765)
chr8 (158-215)||(26312961-26313016)
chr8 (158-210)||(31071463-31071514)
chr8 (158-193)||(18870797-18870832)
chr8 (158-193)||(30655465-30655500)
chr8 (160-194)||(1262188-1262222)
chr8 (158-210)||(28307370-28307419)
chr8 (47-171)||(32902027-32902151)
chr8 (158-210)||(26300960-26301010)
chr8 (30-170)||(29796170-29796308)
chr8 (158-187)||(33038044-33038073)
chr8 (33-210)||(11711807-11711980)
[»] chr4 (40 HSPs)
chr4 (21-210)||(46147197-46147387)
chr4 (21-212)||(52467157-52467350)
chr4 (21-210)||(26175438-26175632)
chr4 (29-210)||(36463198-36463379)
chr4 (21-209)||(47038219-47038407)
chr4 (21-210)||(45686989-45687178)
chr4 (21-210)||(48893445-48893634)
chr4 (47-210)||(12743730-12743891)
chr4 (35-170)||(5872008-5872144)
chr4 (21-210)||(12739355-12739546)
chr4 (29-142)||(36994703-36994817)
chr4 (18-170)||(6542028-6542178)
chr4 (21-210)||(56178438-56178632)
chr4 (21-210)||(9927260-9927454)
chr4 (19-210)||(31474321-31474510)
chr4 (21-206)||(34570220-34570410)
chr4 (35-210)||(37740813-37740992)
chr4 (22-210)||(4588132-4588318)
chr4 (18-213)||(37229528-37229720)
chr4 (35-187)||(5369906-5370062)
chr4 (47-170)||(29254696-29254819)
chr4 (21-187)||(48143216-48143392)
chr4 (21-210)||(54199710-54199903)
chr4 (21-215)||(52082460-52082659)
chr4 (21-210)||(52095164-52095358)
chr4 (24-168)||(5207693-5207833)
chr4 (35-153)||(5429867-5429989)
chr4 (18-210)||(24969834-24970028)
chr4 (18-101)||(29056528-29056610)
chr4 (7-102)||(39593647-39593742)
chr4 (158-210)||(28468761-28468811)
chr4 (132-217)||(48142181-48142265)
chr4 (21-66)||(48142327-48142372)
chr4 (158-193)||(24741765-24741800)
chr4 (132-187)||(29999653-29999708)
chr4 (18-68)||(21703784-21703834)
chr4 (21-118)||(5350081-5350176)
chr4 (162-210)||(31985871-31985917)
chr4 (158-187)||(34496057-34496086)
chr4 (139-187)||(1983515-1983562)
[»] chr5 (32 HSPs)
chr5 (21-212)||(538197-538389)
chr5 (35-217)||(42426030-42426215)
chr5 (19-210)||(8565750-8565945)
chr5 (47-205)||(42428237-42428396)
chr5 (18-210)||(42927060-42927258)
chr5 (35-210)||(13488391-13488567)
chr5 (21-210)||(28750457-28750651)
chr5 (21-210)||(533941-534125)
chr5 (21-210)||(30682724-30682919)
chr5 (21-210)||(31183143-31183339)
chr5 (47-212)||(32637026-32637192)
chr5 (21-210)||(5887237-5887430)
chr5 (35-210)||(39468350-39468529)
chr5 (21-170)||(13239924-13240078)
chr5 (20-170)||(16649676-16649827)
chr5 (21-210)||(33831852-33832044)
chr5 (35-210)||(19806551-19806727)
chr5 (21-170)||(37439314-37439467)
chr5 (18-171)||(16452249-16452403)
chr5 (35-170)||(13343249-13343387)
chr5 (21-187)||(36073867-36074038)
chr5 (132-210)||(3075551-3075629)
chr5 (21-170)||(30182761-30182915)
chr5 (21-170)||(25412933-25413087)
chr5 (105-209)||(42309827-42309931)
chr5 (18-68)||(13695639-13695689)
chr5 (158-210)||(15464345-15464395)
chr5 (71-172)||(26178112-26178215)
chr5 (48-156)||(9049210-9049317)
chr5 (158-210)||(24135661-24135711)
chr5 (158-194)||(35387490-35387526)
chr5 (158-210)||(40147556-40147608)
[»] chr3 (42 HSPs)
chr3 (21-215)||(29196186-29196382)
chr3 (21-210)||(9666272-9666462)
chr3 (18-210)||(21350813-21351002)
chr3 (21-210)||(23391714-23391905)
chr3 (21-187)||(31314617-31314784)
chr3 (24-207)||(44700289-44700472)
chr3 (18-210)||(32891273-32891456)
chr3 (29-206)||(39153170-39153348)
chr3 (33-210)||(22834809-22834986)
chr3 (21-210)||(761019-761209)
chr3 (35-188)||(7762454-7762611)
chr3 (21-210)||(29811040-29811235)
chr3 (21-169)||(16499201-16499340)
chr3 (35-210)||(29813251-29813428)
chr3 (21-210)||(23410133-23410325)
chr3 (21-170)||(40735555-40735709)
chr3 (18-216)||(51351937-51352132)
chr3 (18-210)||(27305521-27305709)
chr3 (21-193)||(19683706-19683884)
chr3 (21-210)||(7764637-7764832)
chr3 (35-210)||(40734686-40734863)
chr3 (21-210)||(51398986-51399180)
chr3 (21-215)||(5236254-5236453)
chr3 (18-210)||(2074885-2075074)
chr3 (35-187)||(29682547-29682700)
chr3 (71-187)||(9635948-9636066)
chr3 (21-170)||(5260164-5260318)
chr3 (35-187)||(9581471-9581627)
chr3 (21-170)||(37408631-37408786)
chr3 (18-98)||(53921422-53921502)
chr3 (21-170)||(5257985-5258139)
chr3 (71-166)||(9634666-9634763)
chr3 (21-118)||(32744342-32744432)
chr3 (21-170)||(45095336-45095490)
chr3 (158-210)||(1305763-1305813)
chr3 (158-210)||(1309668-1309718)
chr3 (158-210)||(32143135-32143185)
chr3 (158-194)||(2671824-2671860)
chr3 (158-194)||(8477188-8477224)
chr3 (158-187)||(8739302-8739331)
chr3 (158-187)||(9091540-9091569)
chr3 (158-194)||(40373033-40373069)
[»] chr1 (52 HSPs)
chr1 (21-210)||(40122003-40122192)
chr1 (21-170)||(50167021-50167171)
chr1 (29-210)||(13137782-13137964)
chr1 (18-210)||(16455790-16455982)
chr1 (21-210)||(45644160-45644350)
chr1 (21-210)||(833972-834163)
chr1 (18-210)||(23555073-23555265)
chr1 (21-187)||(50169039-50169206)
chr1 (35-210)||(28223223-28223401)
chr1 (21-206)||(28265365-28265550)
chr1 (35-170)||(196751-196887)
chr1 (19-210)||(41361085-41361276)
chr1 (21-170)||(3846962-3847117)
chr1 (35-210)||(28220028-28220206)
chr1 (21-210)||(1833685-1833874)
chr1 (21-210)||(46065090-46065276)
chr1 (21-210)||(30476248-30476442)
chr1 (29-210)||(10925406-10925588)
chr1 (42-206)||(4552454-4552619)
chr1 (37-215)||(8550581-8550760)
chr1 (21-210)||(37559666-37559863)
chr1 (21-210)||(13659153-13659332)
chr1 (21-170)||(3157037-3157192)
chr1 (21-211)||(15820479-15820660)
chr1 (18-210)||(927787-927975)
chr1 (42-187)||(8870551-8870698)
chr1 (21-187)||(49918522-49918694)
chr1 (21-118)||(3189503-3189604)
chr1 (21-118)||(3198320-3198421)
chr1 (21-118)||(3207159-3207260)
chr1 (47-210)||(31659440-31659604)
chr1 (21-210)||(37503364-37503553)
chr1 (21-187)||(20762845-20763012)
chr1 (47-210)||(44455362-44455526)
chr1 (117-185)||(36683883-36683951)
chr1 (35-169)||(13316194-13316331)
chr1 (18-68)||(5460076-5460126)
chr1 (47-171)||(44646654-44646777)
chr1 (158-194)||(24203002-24203038)
chr1 (29-68)||(3460876-3460915)
chr1 (139-185)||(32889274-32889320)
chr1 (19-61)||(36683850-36683892)
chr1 (119-208)||(3189620-3189708)
chr1 (119-208)||(3198437-3198525)
chr1 (119-208)||(3207276-3207364)
chr1 (47-171)||(44650012-44650135)
chr1 (47-112)||(51765602-51765666)
chr1 (24-68)||(16914124-16914168)
chr1 (158-194)||(19359080-19359116)
chr1 (158-194)||(19361670-19361706)
chr1 (158-194)||(19380310-19380346)
chr1 (152-210)||(29651622-29651679)
[»] chr7 (46 HSPs)
chr7 (21-210)||(36146214-36146404)
chr7 (21-210)||(41317240-41317430)
chr7 (21-210)||(47675938-47676132)
chr7 (35-210)||(14069635-14069813)
chr7 (35-210)||(14379663-14379841)
chr7 (21-166)||(24525351-24525498)
chr7 (18-210)||(31105202-31105392)
chr7 (21-216)||(47673740-47673940)
chr7 (21-210)||(38671027-38671218)
chr7 (21-210)||(41648816-41649007)
chr7 (21-210)||(19502351-19502545)
chr7 (21-210)||(1113829-1114019)
chr7 (21-170)||(8153514-8153664)
chr7 (47-210)||(18126848-18127013)
chr7 (35-210)||(4586349-4586528)
chr7 (35-210)||(23555229-23555408)
chr7 (18-210)||(26417485-26417683)
chr7 (21-166)||(495833-495979)
chr7 (35-208)||(43864432-43864609)
chr7 (35-210)||(31732770-31732949)
chr7 (55-156)||(30024612-30024714)
chr7 (47-210)||(48489633-48489797)
chr7 (18-177)||(23564903-23565061)
chr7 (37-187)||(25616047-25616199)
chr7 (29-210)||(48491758-48491942)
chr7 (18-170)||(23344142-23344292)
chr7 (18-171)||(4253375-4253527)
chr7 (21-95)||(12097789-12097863)
chr7 (18-210)||(31519072-31519256)
chr7 (47-170)||(27348019-27348144)
chr7 (21-187)||(29991226-29991397)
chr7 (19-170)||(35854086-35854243)
chr7 (18-171)||(36574363-36574515)
chr7 (21-187)||(4178946-4179117)
chr7 (158-210)||(18408578-18408628)
chr7 (158-194)||(1533678-1533714)
chr7 (93-156)||(12097020-12097084)
chr7 (21-171)||(40808760-40808910)
chr7 (158-193)||(20357785-20357820)
chr7 (17-67)||(26639494-26639544)
chr7 (158-187)||(3047085-3047114)
chr7 (158-210)||(18413455-18413505)
chr7 (72-170)||(25766798-25766898)
chr7 (47-112)||(39731574-39731638)
chr7 (158-210)||(6430442-6430494)
chr7 (158-194)||(21645834-21645870)
[»] chr2 (41 HSPs)
chr2 (21-210)||(33162256-33162446)
chr2 (21-216)||(34139569-34139766)
chr2 (21-170)||(11067477-11067627)
chr2 (22-210)||(39285012-39285200)
chr2 (21-210)||(723549-723740)
chr2 (21-210)||(11151397-11151587)
chr2 (21-210)||(42362520-42362711)
chr2 (21-210)||(36773734-36773924)
chr2 (21-187)||(14633652-14633821)
chr2 (21-210)||(36317815-36318005)
chr2 (29-210)||(24885770-24885951)
chr2 (21-210)||(2334220-2334413)
chr2 (21-210)||(36987877-36988071)
chr2 (21-166)||(14202269-14202417)
chr2 (31-170)||(2838132-2838272)
chr2 (35-210)||(29868057-29868235)
chr2 (35-204)||(38312428-38312600)
chr2 (18-187)||(11049723-11049888)
chr2 (29-210)||(11690682-11690854)
chr2 (21-210)||(6594806-6595001)
chr2 (47-210)||(17057171-17057335)
chr2 (47-210)||(17085154-17085318)
chr2 (18-169)||(12123434-12123584)
chr2 (18-112)||(1345636-1345730)
chr2 (21-170)||(45099927-45100081)
chr2 (24-168)||(26353358-26353495)
chr2 (21-170)||(36205506-36205660)
chr2 (21-187)||(5723080-5723251)
chr2 (29-210)||(13121946-13122124)
chr2 (47-170)||(4484169-4484293)
chr2 (21-169)||(4502975-4503128)
chr2 (24-66)||(41446315-41446357)
chr2 (158-210)||(3491565-3491615)
chr2 (158-194)||(9296639-9296675)
chr2 (29-69)||(17490096-17490136)
chr2 (152-187)||(21629784-21629819)
chr2 (18-60)||(7815231-7815273)
chr2 (19-68)||(28672102-28672151)
chr2 (47-112)||(30833551-30833615)
chr2 (158-194)||(14291311-14291347)
chr2 (18-66)||(42019821-42019868)
[»] chr6 (19 HSPs)
chr6 (21-212)||(3038727-3038919)
chr6 (18-210)||(14521480-14521676)
chr6 (35-170)||(9182872-9183011)
chr6 (29-210)||(26954093-26954274)
chr6 (37-210)||(28137213-28137386)
chr6 (21-170)||(33160192-33160347)
chr6 (21-170)||(16569194-16569347)
chr6 (29-141)||(33211060-33211173)
chr6 (21-187)||(5408894-5409065)
chr6 (21-187)||(5413219-5413390)
chr6 (21-170)||(31404516-31404670)
chr6 (52-170)||(16452169-16452288)
chr6 (18-103)||(4045587-4045671)
chr6 (21-170)||(30834375-30834531)
chr6 (21-187)||(5406027-5406195)
chr6 (21-187)||(5410352-5410520)
chr6 (158-194)||(5675005-5675041)
chr6 (158-187)||(30126032-30126061)
chr6 (158-210)||(602905-602957)
[»] scaffold0006 (1 HSPs)
scaffold0006 (21-210)||(148914-149093)
[»] scaffold1668 (1 HSPs)
scaffold1668 (21-210)||(1303-1494)
[»] scaffold0016 (1 HSPs)
scaffold0016 (35-170)||(114791-114930)
[»] scaffold0066 (1 HSPs)
scaffold0066 (21-210)||(20218-20411)
[»] scaffold0978 (1 HSPs)
scaffold0978 (158-194)||(475-511)
[»] scaffold0002 (1 HSPs)
scaffold0002 (21-112)||(434706-434801)
[»] scaffold0491 (1 HSPs)
scaffold0491 (47-112)||(8634-8698)
[»] scaffold0188 (1 HSPs)
scaffold0188 (158-194)||(24279-24315)


Alignment Details
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 46)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 10015248 - 10015441
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg- 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10015248 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgt 10015347  T
Q  117 ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10015348 ttttgcttgtgttcactttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttaaatccgaattcacaa 10015441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 5689451 - 5689633
Alignment:
Q  29 tttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttg-t 126  Q
    ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||| |    
T  5689451 tttgtttctcttctctctttatcttttacttgtggttttgagcttttcactttgattactaaattagatttagatgttgttattattgttgttgcttgtt 5689550  T
Q  127 gtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||||||||||||||||| ||||||||| ||||||||||||| | ||||  |||||||| | |||||| || ||||||||||    
T  5689551 gtttgctttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtga-ttttgagtcggaattcacaa 5689633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 1345367 - 1345178
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||  |||||||||||||||||| ||||||||||||| || ||||||||||| |    
T  1345367 ttggtgtgtttgtttctcttctctctttatcttttgcttgtgattttgagattttcactttgattactagattagatctaggtgttattattattgttgt 1345268  T
Q  120 tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    || |||||||| ||||||||||||||| ||||||||| ||||||||| ||  ||||||  ||| |||| | ||||||||||||||||||||    
T  1345267 tgtttgtgtttactttgatattggttactactttcctttgctccacagattattgtttgtatttgtgtga-ttttgaatccgaattcacaa 1345178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 40321260 - 40321398
Alignment:
Q  29 tttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtg 127  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||    
T  40321260 tttgtttctcttctctctttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattattgttgttgcttgtg 40321359  T
Q  128 tttgctttgatattggttattactttcctctgctccaca 166  Q
    ||| ||||||||||| ||  ||||||||| |||||||||    
T  40321360 tttactttgatattgattgctactttcctttgctccaca 40321398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 21 - 208
Target Start/End: Complemental strand, 3303666 - 3303474
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgatta----ctaaattagatctaggtattgttattattg 116  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||     ||| ||||||||||||| | ||||||||||    
T  3303666 ttggtgtgtttgtttctcttctctctttatcttttgcttgtgattttgtacttttcactttgattgattcctagattagatctaggtgtagttattattg 3303567  T
Q  117 tt-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcac 208  Q
    || ||||||||||||| ||||||||||||||  |||||||| ||||||||||||| | ||||  |||||||| || ||||| |||||||||||    
T  3303566 ttgttgcttgtgtttgttttgatattggttaccactttcctttgctccacacatcatagtttgtattggtgtgagatttgagtccgaattcac 3303474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 29 - 213
Target Start/End: Complemental strand, 41366602 - 41366417
Alignment:
Q  29 tttgtttctcttctctcctt-atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgt 126  Q
    ||||||||||||||| | || |||||||| |||||||||||  ||||||||||||||| ||| ||||||||||||| |||||||| ||||| ||||||||    
T  41366602 tttgtttctcttctcccatttatcttttgtttgtggttttgtgcttttcactttgattcctatattagatctaggtgttgttattgttgttattgcttgt 41366503  T
Q  127 gtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaataa 213  Q
    |||| ||||||||||||||| ||||||||| ||||||||||||| | ||||  |||||||| | |||||| ||||||||||||||||    
T  41366502 gtttactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaataa 41366417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 207
Target Start/End: Original strand, 43036595 - 43036786
Alignment:
Q  21 ttggtgtatttgtt--tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| ||||||  ||||||||||||  ||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||  |||| ||||||    
T  43036595 ttggtgtgtttgttcctctcttctctccctttatcttttgcttgtggttttgagcttttcactttggttactagattagatctaggtggtgttgttattg 43036694  T
Q  117 tt-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattca 207  Q
    || |||||||||||| |||||| |||||||| ||||||||| ||||||||||||| || |||  |||||||| |||||||| ||| ||||||    
T  43036695 ttgttgcttgtgtttactttgaaattggttactactttcctttgctccacacatcattttttgtattggtgtgagttttgagtccaaattca 43036786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 6599153 - 6599331
Alignment:
Q  29 tttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgttttgcttgtgt 128  Q
    ||||||||||||||| | ||||||||| ||||||||||||  ||||||||||||||||||| ||||||||||||| ||||||||||||  ||| ||||||    
T  6599153 tttgtttctcttctccctttatctttttcttgtggttttgtgcttttcactttgattactagattagatctaggtgttgttattattg--ttgtttgtgt 6599250  T
Q  129 ttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |  ||||||||||||||| ||||||||| ||||| ||||||| | ||||  |||||||| | |||||| |||||||||||||    
T  6599251 tcactttgatattggttactactttcctttgctctacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 6599331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 6674606 - 6674784
Alignment:
Q  29 tttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgttttgcttgtgt 128  Q
    ||||||||||||||| | ||||||||| ||||||||||||  ||||||||||||||||||| ||||||||||||| ||||||||||||  ||| ||||||    
T  6674606 tttgtttctcttctccctttatctttttcttgtggttttgtgcttttcactttgattactagattagatctaggtgttgttattattg--ttgtttgtgt 6674703  T
Q  129 ttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |  ||||||||||||||| ||||||||| ||||| ||||||| | ||||  |||||||| | |||||| |||||||||||||    
T  6674704 tcactttgatattggttactactttcctttgctctacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 6674784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 1292463 - 1292311
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgt 117  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| ||||||||||||| |||||||| ||||    
T  1292463 ttcttggtgtgtttgtttctcttctctccttatcttttgctcgtggttttgagcttttcactttgattcctagattagatctaggtgttgttattgttgt 1292364  T
Q  118 t-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacat 169  Q
    |  | ||||||||| ||||||||||| ||| |||||| || |||||| |||||    
T  1292363 tactacttgtgtttactttgatattgtttactacttttctttgctccccacat 1292311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 19491696 - 19491505
Alignment:
Q  19 tcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt 118  Q
    ||||||||| ||||||||| ||||| | |||||||||| |||||||||||| ||||| ||||||||| ||| ||||||| ||||| |||||||| |||||    
T  19491696 tcttggtgtgtttgtttcttttctcactttatcttttgtttgtggttttgagctttttactttgattcctagattagatataggtgttgttattgttgtt 19491597  T
Q  119 -ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     || ||||||||| ||||||||||| ||| ||||||||| ||||||||||||| | ||||| ||||||   |||||||| |||||||||||||    
T  19491596 gttacttgtgtttactttgatattgattaatactttcctttgctccacacatcatagtttt-attggttagagttttgagtccgaattcacaa 19491505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 30143512 - 30143706
Alignment:
Q  21 ttggtgtatttgtt--tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| ||||||  ||||||||||||  ||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||| |||||||| |||    
T  30143512 ttggtgtgtttgttcctctcttctctccctttatcttttgcttgtggttttgagcttttcactttgattcctagattagatctaggtgttgttattgttg 30143611  T
Q  117 --ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
      | |||||||||||  ||||||||||||||| ||||||||| ||||||||||||| | ||||  |||||||| | |||||| || ||||||||||    
T  30143612 attattgcttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaa 30143706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 4743210 - 4743029
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtttt 120  Q
    ||||||| ||||||||||||||||| |||||||| |||||||||||||  ||||||||||||||| ||| ||||||||||||| ||||||        ||    
T  4743210 ttggtgtgtttgtttctcttctctctttatctttcgcttgtggttttgtgcttttcactttgattcctagattagatctaggtgttgtta--------tt 4743119  T
Q  121 gcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||||||| ||||| |||||||||  |||||||| ||||||||||||  | ||||  |||||||| || ||||| |||||||||||||    
T  4743118 gcttgtgtttactttggtattggttaccactttcctttgctccacacattatagtttgtattggtgtgagatttgagtccgaattcacaa 4743029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 15212958 - 15213153
Alignment:
Q  21 ttggtgtatttgtt--tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| ||||||  ||||||||||||  ||||||||||||||||| ||||  ||||||||||||||| ||| |||||||| ||||  ||||||| |||    
T  15212958 ttggtgtgtttgttcctctcttctctccctttatcttttgcttgtggctttgtgcttttcactttgattcctagattagatcaaggtgctgttattgttg 15213057  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     ||  || |||||||  ||||||||||||||| ||||||||| ||||||||||||| | ||||  |||||||| |||||||| |||||||||||||    
T  15213058 attattgtttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaa 15213153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 30 - 170
Target Start/End: Complemental strand, 18106058 - 18105917
Alignment:
Q  30 ttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtgt 128  Q
    |||||||||||||||| |||||||||||||||| |||||   |||||||||||||| ||| |||||||||||||  ||||||| ||||| ||||||||||    
T  18106058 ttgtttctcttctctctttatcttttgcttgtgattttgtgtttttcactttgattcctagattagatctaggtgatgttattgttgttattgcttgtgt 18105959  T
Q  129 ttgctttgatattggttattactttcctctgctccacacatc 170  Q
    || |||| |||||||||| ||||||||| ||||| |||||||    
T  18105958 ttactttaatattggttactactttcctttgctctacacatc 18105917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 4731830 - 4732024
Alignment:
Q  21 ttggtgtatttgtt--tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| ||||||  ||||||||||||  ||||||||||||||||||||||  ||||||||||||||| ||| |||||||||||||  ||||||| |||    
T  4731830 ttggtgtgtttgttcctctcttctctccctttatcttttgcttgtggttttgtgcttttcactttgattcctagattagatctaggtgctgttattgttg 4731929  T
Q  117 --ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
      | ||| |||||||  ||||||||| ||||| ||||||||| ||||||||||||| ||||||  |||||||| | |||||| | |||||||||||    
T  4731930 attattgtttgtgttcactttgatatcggttactactttcctttgctccacacatcattgtttgtattggtgtga-ttttgagttcgaattcacaa 4732024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 18141990 - 18142105
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    |||||||  |||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| ||||||||||| || |    
T  18141990 ttggtgtgcttgtttctctgctctctttatcttttgcttgtggttttgagcttttcactttgattactagattagatgtaggtgttgttattattattgt 18142089  T
Q  120 tgcttgtgtttgcttt 135  Q
    ||||||||||| ||||    
T  18142090 tgcttgtgtttacttt 18142105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 47 - 170
Target Start/End: Original strand, 27811480 - 27811605
Alignment:
Q  47 ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgtttgctttgatattggt 144  Q
    |||||||||||||||| |||||  ||||||||||||||| ||||||||||||||||| |||||||| |||  | |||||||||||  |||||||||||||    
T  27811480 ttatcttttgcttgtgattttgtgcttttcactttgattcctaaattagatctaggtgttgttattgttgattattgcttgtgttcactttgatattggt 27811579  T
Q  145 tattactttcctctgctccacacatc 170  Q
    || ||||||||| | |||||||||||    
T  27811580 tactactttcctttcctccacacatc 27811605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 35 - 210
Target Start/End: Complemental strand, 12702614 - 12702433
Alignment:
Q  35 tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgatta-ctaaattagatctaggtat---tgttattattgtt-ttgcttgtg 127  Q
    ||||||||||||  ||||||| ||||||||||||||   ||||||||||||||  ||| ||||||||||||| |   ||||||||||||| |||||||||    
T  12702614 tctcttctctccctttatcttgtgcttgtggttttgtgtttttcactttgattttctagattagatctaggtgtcgttgttattattgttgttgcttgtg 12702515  T
Q  128 tttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||| ||||||||||||||| ||||||||| ||||||||||||| | ||||  |||| ||| | |||||| |||||||||||||    
T  12702514 tttactttgatattggttactactttcctttgctccacacatcatagtttgtattgatgtga-ttttgagtccgaattcacaa 12702433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 47 - 210
Target Start/End: Original strand, 4733908 - 4734073
Alignment:
Q  47 ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgttt--tgcttgtgtttgctttgatattggt 144  Q
    ||||||||| ||||||||||||  ||||||| |||| || ||| ||| ||||||||| |||||||| ||| ||  ||||||||||   ||||||||||||    
T  4733908 ttatcttttccttgtggttttgtgcttttcattttgtttcctacatttgatctaggtgttgttattgttgattattgcttgtgttcattttgatattggt 4734007  T
Q  145 tattactttcctctgctccacacatc-tttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    || ||||||||| ||||||||||||| || ||||  |||||||||| ||||||||||||||||||||    
T  4734008 tactactttcctttgctccacacatcattggtttgtattggtgtaa-ttttgaatccgaattcacaa 4734073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 42498367 - 42498522
Alignment:
Q  21 ttggtgtatttgtttc--tcttctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattatt- 115  Q
    ||||||| ||||||||  ||||||||||||  ||||||||||||||||||||   |||||||||||||| ||| ||||||||||||| |||||||| ||     
T  42498367 ttggtgtgtttgtttccctcttctctccttttatcttttgcttgtggttttgtgtttttcactttgattcctagattagatctaggtgttgttattgtta 42498466  T
Q  116 -gttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
      | |||||||||||  ||||||||||||||  ||||||||| |||||||||||||    
T  42498467 attattgcttgtgttcactttgatattggttgctactttcctttgctccacacatc 42498522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 30291780 - 30291856
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagat 97  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  30291780 ttggtgtgtttgtttctcttctctctttatcttttgcttgtggttttgaactttccactttgattactagattagat 30291856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 33352352 - 33352473
Alignment:
Q  47 ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgttt--tgcttgtgtttgctttgatattggt 144  Q
    ||||||||||||||||| ||||   |||||||||||||| ||| ||||||| ||||| |||||||| ||| ||  ||||||||||  |||||||||||||    
T  33352352 ttatcttttgcttgtggatttgtgtttttcactttgatttctagattagatttaggtgttgttattgttgattattgcttgtgttcactttgatattggt 33352451  T
Q  145 tattactttcctctgctccaca 166  Q
    |||||||||||| |||||||||    
T  33352452 tattactttcctttgctccaca 33352473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 44304028 - 44304182
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  |||||||||||||||||| |  ||||||||||||||| ||| ||||||||||||| |||||||| |||    
T  44304028 ttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggttt-gtgcttttcactttgatttctagattagatctaggtgttgttattgttg 44304126  T
Q  117 --ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
      | ||||||||| |  |||| |||||||||| ||||||||| |||||||||||||    
T  44304127 attattgcttgtgctcactttaatattggttactactttcctttgctccacacatc 44304182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 34254326 - 34254155
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  |||||||||||||||||| |  |||||| |||||||| ||| |||||||||||||  ||||||| |||    
T  34254326 ttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggttt-gtgcttttctctttgattcctagattagatctaggtgctgttattgttg 34254228  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
     ||  |||||||| |  ||||||||||||||| ||||||||| ||||||||||||| | ||||  ||||||||    
T  34254227 attattgcttgtgctcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgt 34254155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 210
Target Start/End: Complemental strand, 3051090 - 3050927
Alignment:
Q  50 tcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttg----tgtttgctttgatattggt 144  Q
    |||| ||||||||||||||| ||||||||||| ||| ||| ||||||||||||| |||||||||||||| |||||||    || ||||||||||  ||||    
T  3051090 tcttatgcttgtggttttgagcttttcactttaatttctagattagatctaggtgttgttattattgttgttgcttgtgattgcttgctttgattgtggt 3050991  T
Q  145 tattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    || |||||| || | ||||||||||| || |||  |||||||| || ||||| ||| |||||||||    
T  3050990 tactacttttctttactccacacatcattattt--attggtgtgagatttgagtcccaattcacaa 3050927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 17982826 - 17982997
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  || ||||||||||||||| |  ||||||||||||||| ||| |||||||||||||  ||||||| |||    
T  17982826 ttggtgtgtttgtttctctcttctctccttttatattttgcttgtggttt-gtgcttttcactttgattcctagattagatctaggtgctgttattgttg 17982924  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
     ||  ||||||||||  ||||| ||||||||| ||| ||||| ||||||||||||| | ||||  ||||||||    
T  17982925 attattgcttgtgttcactttgttattggttactacgttcctttgctccacacatcatagtttgtattggtgt 17982997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 34256502 - 34256331
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  |||||||||||||||||| |  |||||| |||||||| ||| |||||||||||||  ||||||| |||    
T  34256502 ttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggttt-gtgcttttctctttgattcctagattagatctaggtgctgttattgttg 34256404  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
     ||  |||||||| |  |||| |||||||||| ||||||||| ||||||||||||| | ||||  ||||||||    
T  34256403 attattgcttgtgctcactttaatattggttactactttcctttgctccacacatcatagtttgtattggtgt 34256331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 3073867 - 3073723
Alignment:
Q  24 gtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgc 122  Q
    |||| |||||||||||| |||| |||||||||||||||||||||| ||| |||||||| ||| ||| |||| |||||||| ||||| || |||||  |||    
T  3073867 gtgtgtttgtttctcttatctctttatcttttgcttgtggttttgtactcttcacttt-attcctagattaaatctaggt-ttgttgttgttgttgctgc 3073770  T
Q  123 ---ttgtgtttgctttgatattggttattactttcctctgctccaca 166  Q
       ||||| || |||||||| |||||||||||||||| |||||||||    
T  3073769 tcattgtggttactttgatactggttattactttcctttgctccaca 3073723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 1746214 - 1746060
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  || ||||||||||||||| |  ||||| ||||||||| ||| |||||||||||||  ||||||| |||    
T  1746214 ttggtgtgtttgtttctctcttctctccttttatattttgcttgtggttt-gcgcttttgactttgattcctagattagatctaggtgctgttattgttg 1746116  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
     ||  ||||||||||  ||||| ||||||||| ||||||||| | |||||||||||    
T  1746115 attattgcttgtgttcactttgttattggttactactttcctttactccacacatc 1746060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 170
Target Start/End: Original strand, 8153966 - 8154107
Alignment:
Q  28 atttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgt 126  Q
    ||||||||||||||| |  ||||||||||| |||  |||||   |||||||||| ||| ||| |||| |||||||| |||||||||||||| ||||||||    
T  8153966 atttgtttctcttctttgtttatcttttgcatgtaattttgtgtttttcacttt-attcctagattacatctaggt-ttgttattattgttgttgcttgt 8154063  T
Q  127 gtttgctttgatattggttattactttcctctgctccacacatc 170  Q
    | || ||||||||||| ||| ||||||||| | || ||||||||    
T  8154064 ggttactttgatattgattactactttcctttacttcacacatc 8154107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 19945354 - 19945200
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  || ||||||||||||||| |  |||||||||| |||| ||| |||||||||||||  ||||||| |||    
T  19945354 ttggtgtgtttgtttctctcttctctccttttatattttgcttgtggttt-gtgcttttcacttcgattcctagattagatctaggtgctgttattgttg 19945256  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
     ||  ||||||  ||  ||||| ||||||||| ||||||||| |||||||||||||    
T  19945255 attattgcttgcattcactttgttattggttactactttcctttgctccacacatc 19945200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 8965685 - 8965494
Alignment:
Q  23 ggtgtatttgtttctcttctctccttatcttttgcttgtggttttg--------aacttttcactttgattactaaattagatctaggtattgttattat 114  Q
    ||||| ||||||||| ||||||| |||||||||| |||||||||||           ||||||| |||||| ||| |||| |||||||| |||||||| |    
T  8965685 ggtgtgtttgtttcttttctctctttatcttttgtttgtggttttgtttttttttttttttcac-ttgattcctagattaaatctaggt-ttgttattgt 8965588  T
Q  115 tgtt-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||| ||||||||| || ||||||||||||||| ||| ||||| |||||||| |||| | ||||| |||||||| | |||||| | |||||||||||    
T  8965587 tgttgttgcttgtggttactttgatattggttactacgttcct-tgctccacgcatcatagtttt-attggtgtga-ttttgagttcgaattcacaa 8965494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 31218430 - 31218601
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  ||||| ||||| || |||||  |||||||||||| || ||| |||||||||||||  ||||||| |||    
T  31218430 ttggtgtgtttgtttctctcttctctccttttatcttgtgcttatg-ttttgtgcttttcactttgtttcctagattagatctaggtgctgttattgttg 31218528  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
     ||  ||||||  ||  ||||| ||||||||  ||||||||| ||||||||||||| | ||||  ||||||||    
T  31218529 attattgcttgcattcactttgttattggttgctactttcctttgctccacacatcatagtttatattggtgt 31218601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 26287765 - 26287710
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaataaat 215  Q
    |||||||||||||||||||| ||||||||| ||||||  |||||||||||||| ||||    
T  26287765 tgctccacacatctttgtttacattggtgtgagtttt--atccgaattcacaacaaat 26287710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 26313016 - 26312961
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaataaat 215  Q
    |||||||||||||||||||| ||||||||| ||||||  |||||||||||||| ||||    
T  26313016 tgctccacacatctttgtttacattggtgtgagtttt--atccgaattcacaacaaat 26312961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 31071463 - 31071514
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||||||||||||||||| ||||||||| ||||||  ||||||||||||||    
T  31071463 tgctccacacatctttgtttacattggtgtgagtttt-tatccgaattcacaa 31071514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 193
Target Start/End: Original strand, 18870797 - 18870832
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagttt 193  Q
    |||||||||||||||||||||||||||||| |||||    
T  18870797 tgctccacacatctttgttttcattggtgtgagttt 18870832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 193
Target Start/End: Complemental strand, 30655500 - 30655465
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagttt 193  Q
    |||||||||||||||||||||||||||||| |||||    
T  30655500 tgctccacacatctttgttttcattggtgtgagttt 30655465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 1262188 - 1262222
Alignment:
Q  160 ctccacacatctttgttttcattggtgtaagtttt 194  Q
    |||||||||||||||||||||||||||| ||||||    
T  1262188 ctccacacatctttgttttcattggtgtgagtttt 1262222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 28307419 - 28307370
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||||||||||||||||||||||||||| | |||   ||||||||||||||    
T  28307419 tgctccacacatctttgttttcattggtgtgatttt---atccgaattcacaa 28307370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 171
Target Start/End: Complemental strand, 32902151 - 32902027
Alignment:
Q  47 ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtgtttgctttgatattggtt 145  Q
    ||||||||||||| ||||||||   ||||||| ||| || ||| ||||||||||||| ||||| || ||||| ||| ||| | ||||||||||||| |||    
T  32902151 ttatcttttgcttttggttttgtgtttttcac-ttggttcctagattagatctaggt-ttgttgttgttgttgttgtttgaggttgctttgatattagtt 32902054  T
Q  146 attactt-tcctctgctccacacatct 171  Q
    | ||||| || | ||||||||||||||    
T  32902053 actacttctcttttgctccacacatct 32902027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 26301010 - 26300960
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||||| ||||||||||| ||||||||| ||||||  ||||||||||||||    
T  26301010 tgctccacgcatctttgtttacattggtgtgagtttt--atccgaattcacaa 26300960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 170
Target Start/End: Complemental strand, 29796308 - 29796170
Alignment:
Q  30 ttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtgt 128  Q
    |||||| ||||||||  ||||||||||||| || |||||  |||| |||||  ||||||| |||| ||||| | ||||||||||||||| ||||| | |     
T  29796308 ttgtttatcttctctt-ttatcttttgcttatgattttgtgctttacactta-attactagattaaatctaag-attgttattattgttgttgctcgaga 29796212  T
Q  129 ttgctttgatattggttattactttcctctgctccacacatc 170  Q
     | |||||||| |||||||||||| | | |||||||||||||    
T  29796211 atactttgatactggttattacttccttttgctccacacatc 29796170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 187
Target Start/End: Original strand, 33038044 - 33038073
Alignment:
Q  158 tgctccacacatctttgttttcattggtgt 187  Q
    ||||||||||||||||||||||||||||||    
T  33038044 tgctccacacatctttgttttcattggtgt 33038073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 210
Target Start/End: Complemental strand, 11711980 - 11711807
Alignment:
Q  33 tttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtgtttg 131  Q
    ||||| ||||||| ||||| |||| ||||||||||   |||| |||| | ||| ||| ||||||||||||| |||| ||| ||||| || |||| | ||     
T  11711980 tttcttttctctctttatcctttgtttgtggttttatgctttacactct-attcctatattagatctaggt-ttgt-attgttgttgtttcttgaggtta 11711884  T
Q  132 ctttgatattggttattactttcctct-gctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||| || ||||||| ||||||||| | |||||||||||||  ||||  |||||||||| |||||| |||||||||||||    
T  11711883 cttttatcttggttactactttccttttgctccacacatctaagttt--attggtgtaa-ttttgagtccgaattcacaa 11711807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 46147387 - 46147197
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  46147387 ttggtgtgtttgtttctcttctctctttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtattgttattattgttgt 46147288  T
Q  120 tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||||||||||  ||||||||||||||| ||||||||| ||||||||||||| | |||| ||||||||| ||||||||  | ||||||||||    
T  46147287 tgcttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgcattggtgtgagttttgaggcggaattcacaa 46147197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 52467350 - 52467157
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-- 118  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||| || |||||||||||| |      
T  52467350 ttggtgtgtttgtttctcttctctctttatcttttgcttgtggttttgagcttttcactttgattactagattagatctatgtgttgttattattgatga 52467251  T
Q  119 ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaata 212  Q
    |||||||| ||| |||||||||||||||  |||||||| |||| |||||||| | ||||  |||||||| |||||||| |||||||||||||||    
T  52467250 ttgcttgtctttactttgatattggttaccactttcctttgcttcacacatcatagtttgtattggtgtgagttttgagtccgaattcacaata 52467157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 26175632 - 26175438
Alignment:
Q  21 ttggtgtatttgtt--tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| ||||||  ||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||    
T  26175632 ttggtgtgtttgttcctctcttctctccctttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattattg 26175533  T
Q  117 -ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     | |||||||||||| |||||| |||||||| ||||||||| ||||||||||||| | ||||  |||||||| |||||||| |||||||||||||    
T  26175532 ctattgcttgtgtttactttgaaattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaa 26175438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 36463379 - 36463198
Alignment:
Q  29 tttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtg 127  Q
    ||||||||||||||||| |||||||||||||||||||||||  ||||| |||||||||| ||||||||||||||| |||||||||||||| |||||||||    
T  36463379 tttgtttctcttctctctttatcttttgcttgtggttttgagtttttcgctttgattaccaaattagatctaggtgttgttattattgttgttgcttgtg 36463280  T
Q  128 tttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||| ||||||||||||||||||||||||| | ||||||||||| | ||||  ||| |||| | |||||| |||||||||||||    
T  36463279 tttactttgatattggttattactttcctttactccacacatcatagtttgtattagtgtga-ttttgagtccgaattcacaa 36463198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 47038407 - 47038219
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||| ||| ||||||||||||| |||||||| ||||| |    
T  47038407 ttggtgtgtttgtttctcttctctctttatcttttgcttgtggttttgtgcttttcactttgattcctagattagatctaggtgttgttattgttgttat 47038308  T
Q  120 tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcaca 209  Q
    || |||||||| ||||||||||||||| ||||||||| || |||||||||| | ||||  |||||||| | |||||| ||| ||||||||    
T  47038307 tgtttgtgtttactttgatattggttactactttcctttgttccacacatcatagtttgtattggtgtga-ttttgagtccaaattcaca 47038219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 45687178 - 45686989
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||||| ||||||| |||||| |||||||||||||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||| |    
T  45687178 ttggtgtgtttgtttcttttctctctttatctgttgcttgtggttttgagcttttcactttgattactagatt-gatctaggtgttgttattattgttgt 45687080  T
Q  120 tgcttg-tgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||| ||||||||||||||||||||| ||||||||| ||||||| ||||| | ||||  |||||||| | |||||| || ||||||||||    
T  45687079 tgcttgttgtttgctttgatattggttactactttcctttgctccatacatcatagtttgtattggtgtga-ttttgagtctgaattcacaa 45686989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 48893634 - 48893445
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||||||||||||| |||||||||||||||| |||||  |||||||||||||||  |  |||||||||||||  ||||||| ||||| |    
T  48893634 ttggtgtgtttgtttctcttctctctttatcttttgcttgtgattttgtgcttttcactttgattcttggattagatctaggtgctgttattgttgttat 48893535  T
Q  120 tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||||||||||| ||||||||||||||| ||||||||| ||||||||||||| | ||||  |||||||| | |||||| |||||||||||||    
T  48893534 tgcttgtgtttactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 48893445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 12743891 - 12743730
Alignment:
Q  47 ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgttttgcttgtgtttgctttgatattggtta 146  Q
    ||||||||||||||| ||||||  ||||||||||||||||||| ||||||||||||| ||||||||||||  |||||||||||| |||||| ||||||||    
T  12743891 ttatcttttgcttgtagttttgtgcttttcactttgattactagattagatctaggtgttgttattattg--ttgcttgtgtttactttgaaattggtta 12743794  T
Q  147 ttactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     ||||||||| ||||||||||| | | ||||  |||||||| |||||||| |||||||||||||    
T  12743793 ctactttcctttgctccacacaacatagtttgtattggtgtgagttttgagtccgaattcacaa 12743730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 35 - 170
Target Start/End: Original strand, 5872008 - 5872144
Alignment:
Q  35 tctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtgtttgct 133  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||| ||| |||||||  ||    
T  5872008 tctcttctctctctatcttttgcttttggttttgagcttttcactttgattactagattagatctaggtgttgttattattgttgttgtttgtgttcact 5872107  T
Q  134 ttgatattggttattactttcctctgctccacacatc 170  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  5872108 ttgatattggttactactttcctttgctccacacatc 5872144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 12739546 - 12739355
Alignment:
Q  21 ttggtgtatttgtt--tctcttctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| ||||||  ||||||||||||||  ||||||||||||||||||||  ||||||||||||||||||  ||||||||||||| ||||||||||      
T  12739546 ttggtgtgtttgttcctctcttctctccttttatcttttgcttgtggttttgtgcttttcactttgattacttgattagatctaggtgttgttattat-- 12739449  T
Q  117 ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    | |||||||||||| |||||| |||||||| ||||||| | | ||||||||||| | ||||  |||||||| |||||||| |||||||||||||    
T  12739448 tattgcttgtgtttactttgaaattggttactactttcttttactccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaa 12739355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 36994703 - 36994817
Alignment:
Q  29 tttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtg 127  Q
    ||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||    
T  36994703 tttgtttctcttctctctttatcttttgcttgtggttttgagtttttcactttgattactagattagatctaggtgttgttattattgttgttgcttgtg 36994802  T
Q  128 tttgctttgatattg 142  Q
    ||| |||||| ||||    
T  36994803 tttactttgaaattg 36994817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 6542178 - 6542028
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgt 117  Q
    |||||||||| |||||||||||| |||| ||||||||| |||||| |||||   |||||||||| ||| ||| ||||||||||||| |||||||| |||     
T  6542178 ttcttggtgtgtttgtttctcttatctctttatctttttcttgtgattttgtgtttttcactttaattcctagattagatctaggttttgttattgttg- 6542080  T
Q  118 tttgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
     ||||||||| || ||||||||||||||||||||||||| |||||||||||||    
T  6542079 -ttgcttgtgattactttgatattggttattactttcctttgctccacacatc 6542028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 56178632 - 56178438
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattatt- 115  Q
    ||||||| |||||||||||  |||||||||  ||||||||||||||||||||  ||||||||||| ||| ||| ||||||||||||| |||||||| ||     
T  56178632 ttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggttttgtgcttttcactttcattcctagattagatctaggtgttgttattgttt 56178533  T
Q  116 -gttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
      | |||||||||||  ||||||||||||||| ||||||||| ||||||||||||| | ||||  |||||||| | |||||| |||||||||||||    
T  56178532 attattgcttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 56178438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 9927454 - 9927260
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt-atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgt 117  Q
    ||||||| |||||| ||||  ||||||||| ||||||||||||||| ||||  ||||||||||||||| ||| |||| ||||||||  ||||||| |||     
T  9927454 ttggtgtgtttgttcctctattctctcctttatcttttgcttgtggatttgtgcttttcactttgattcctagattaaatctaggtgctgttattgttga 9927355  T
Q  118 tt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||  ||||||||||| ||||||||||||| | ||||||||| ||||||||||||| | ||||  |||||||  |||||||| |||||||||||||    
T  9927354 ttattgcttgtgtttactttgatattggtaactactttcctttgctccacacatcatagtttatattggtgcgagttttgagtccgaattcacaa 9927260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 31474321 - 31474510
Alignment:
Q  19 tcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt 118  Q
    ||||||||| ||||||||||||||| | |||||||| |||| || |||||  ||||||||||| ||| ||| ||||||||||||| |||||||| |||||    
T  31474321 tcttggtgtgtttgtttctcttctccctttatctttagcttttgattttgtgcttttcactttaattcctagattagatctaggtgttgttattgttgtt 31474420  T
Q  119 -ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     ||| |||||||| ||||||||||| ||| ||||||| | |||| |||||||| ||||||  |||||||| |   |||| |||||||||||||    
T  31474421 gttgtttgtgtttactttgatattgattactactttcatttgctacacacatcattgtttgtattggtgtga---ttgagtccgaattcacaa 31474510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 34570410 - 34570220
Alignment:
Q  21 ttggtgtatttgtt--tctcttctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| ||||||  ||||||||||||||  ||||||||||||||||||||  |||||||||||||||  || ||||||||||||| |||||||| |||    
T  34570410 ttggtgtgtttgttcctctcttctctccttttatcttttgcttgtggttttgtgcttttcactttgattcttagattagatctaggtgttgttattgttg 34570311  T
Q  117 --ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattc 206  Q
      | ||| |||||||   |||||||||||||| ||||||||| ||||||||||||| | ||||  |||||||| | ||||||||||||||||    
T  34570310 attattgtttgtgttcattttgatattggttactactttcctttgctccacacatcatagtttatattggtgtga-ttttgaatccgaattc 34570220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 210
Target Start/End: Original strand, 37740813 - 37740992
Alignment:
Q  35 tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgttt 130  Q
    ||||||||||||  ||||||||||||||||||||||  ||||||||||||||| ||| |||||||||||||  ||||||| |||  | ||| || ||||     
T  37740813 tctcttctctccctttatcttttgcttgtggttttgtgcttttcactttgattcctacattagatctaggtgctgttattgttgattattgattctgttc 37740912  T
Q  131 gctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     ||||||||||| ||| ||||||||| ||||||||||||| | ||||  |||||||| |||||||| |||||||| ||||    
T  37740913 actttgatattgattactactttcctgtgctccacacatcatagtttgtattggtgtgagttttgagtccgaatttacaa 37740992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 22 - 210
Target Start/End: Original strand, 4588132 - 4588318
Alignment:
Q  22 tggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgttttg 121  Q
    |||||| |||||||||| |||||| |||||||||||||||| |||||  ||||||||||||||| ||| ||||||| | ||| |||||||| |||  |||    
T  4588132 tggtgtgtttgtttctcctctctctttatcttttgcttgtgattttgtgcttttcactttgattcctatattagatattggttttgttattgttg--ttg 4588229  T
Q  122 cttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaag-ttttgaatccgaattcacaa 210  Q
     ||||| ||||||||||| |||||| || |||||| |||||||||||||   || || |||||||| || |||||| |||||||||||||    
T  4588230 tttgtgattgctttgatagtggttactattttcctttgctccacacatcaaagtatt-attggtgtgagtttttgagtccgaattcacaa 4588318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 37229720 - 37229528
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgt 117  Q
    ||||||| || ||||||||||||||||| ||||||||| ||| ||||||||  ||||||||||| ||| ||||||||||||||||| | |||||| ||||    
T  37229720 ttcttggcgtgtttgtttctcttctctctttatcttttacttatggttttgtgcttttcacttt-attcctaaattagatctaggt-tggttattgttgt 37229623  T
Q  118 t-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaataa 213  Q
    | ||||||||  || ||||||||||||||| ||||| ||  ||||||||||| | | ||||| |||||| | | |||||| ||||||||||||||||    
T  37229622 tattgcttgttgttactttgatattggttactacttcccattgctccacacaacatagtttt-attggtttta-ttttgagtccgaattcacaataa 37229528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 187
Target Start/End: Complemental strand, 5370062 - 5369906
Alignment:
Q  35 tctcttctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgttt 130  Q
    ||||||||||||||  ||||||||||||||||||||  ||||||||||||||| ||| |||||||||||||  ||||||| |||  | |||||||||||     
T  5370062 tctcttctctccttttatcttttgcttgtggttttgtgcttttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttc 5369963  T
Q  131 gctttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
     ||||||||||| ||| ||||||||| | ||||||||||| | ||||  ||||||||    
T  5369962 actttgatattgattactactttcctttactccacacatcatagtttgtattggtgt 5369906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 47 - 170
Target Start/End: Original strand, 29254696 - 29254819
Alignment:
Q  47 ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgt-tttgcttgtgtttgctttgatattggtt 145  Q
    ||||||||||||||||||||||   |||||||||||||||||| ||||||||||||| |||||||||||||  ||| |||||||  |||| |||||||||    
T  29254696 ttatcttttgcttgtggttttgtgtttttcactttgattactagattagatctaggtgttgttattattgtcgttgtttgtgttcactttaatattggtt 29254795  T
Q  146 attactttcctctgctccacacatc 170  Q
    | |||||| || |||||||||||||    
T  29254796 actacttt-ctttgctccacacatc 29254819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 48143216 - 48143392
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaac----ttttcactttgattactaaattagatctaggtattgttatt 112  Q
    ||||||| |||||||||||  |||||||||  |||||||||||||| |||||  |    |||||||||||||| ||| ||||||||||||| ||||||||    
T  48143216 ttggtgtgtttgtttctctcttctctccttttatcttttgcttgtgattttgtgcttttttttcactttgattcctagattagatctaggtgttgttatt 48143315  T
Q  113 attg--ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
     |||  | |||||||||||  ||||||||||||||| ||||||||| ||||||||||||| | ||||  ||||||||    
T  48143316 gttgattattgcttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgt 48143392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 54199903 - 54199710
Alignment:
Q  21 ttggtgtatttgtt--tctcttctctcctt-atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg- 116  Q
    ||||||| ||||||  |||||||||||||| || |||||||||||| ||||  |||||||||||||||  || |||||||||||||  |||||||  ||     
T  54199903 ttggtgtgtttgttcctctcttctctcctttatattttgcttgtggatttgtgcttttcactttgattcttagattagatctaggtgatgttattgctga 54199804  T
Q  117 -ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     | |||||||||||  |||||||| |||||| ||||||||| ||||||| ||||| | ||||  |||||||| | |||||| |||||||||||||    
T  54199803 ttattgcttgtgttcactttgatactggttactactttcctttgctccatacatcatcgtttgtattggtgtga-ttttgagtccgaattcacaa 54199710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 52082659 - 52082460
Alignment:
Q  21 ttggtgtatttgttt--ctcttctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||  |||||||||||||  |||||||||||||||||||   ||||||  ||||||| ||| || ||||||||||  ||||||| |||    
T  52082659 ttggtgtgtttgtttatctcttctctccttttatcttttgcttgtggttttatgcttttctttttgattcctagataagatctaggtgctgttattgttg 52082560  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaataaa 214  Q
     ||  ||||||||||  ||||||||||||||| ||||||||| || |||||||||| |  |||  |||||||| | |||||| ||||||||||||| |||    
T  52082559 attattgcttgtgttcactttgatattggttactactttcctttgttccacacatcataatttgtattggtgtga-ttttgagtccgaattcacaacaaa 52082461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 52095358 - 52095164
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  ||||||| ||||||||||||  |||||| |||||| | ||| ||||||||||||| |||||||| |||    
T  52095358 ttggtgtgtttgtttctctcttctctccttttatcttttccttgtggttttgtgcttttctctttgactcctagattagatctaggtgttgttattgttg 52095259  T
Q  117 --ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
      | || ||||||||  ||||||||||| ||| ||||||||| || ||||||| || | ||||  |||||||| | |||||| |||||||||||||    
T  52095258 attattacttgtgttcactttgatattgattactactttcctttgttccacacgtcatagtttgtattggtgtga-ttttgagtccgaattcacaa 52095164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 168
Target Start/End: Complemental strand, 5207833 - 5207693
Alignment:
Q  24 gtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgttttgct 123  Q
    |||||||||||||||||||||  |||||| |||| ||||||||||  |||||||| |||||| ||||||||||||||||| ||| |||| |||  |||||    
T  5207833 gtgtatttgtttctcttctctatttatctgttgcatgtggttttgtgcttttcac-ttgattcctaaattagatctaggt-ttgatattgttg--ttgct 5207738  T
Q  124 tgtgtttgctttgatattggttattactttcctctgctccacaca 168  Q
    || | || |||||||||   ||| ||||||||| |||||||||||    
T  5207737 tgaggttactttgatatcaattactactttcctttgctccacaca 5207693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 35 - 153
Target Start/End: Original strand, 5429867 - 5429989
Alignment:
Q  35 tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgttt 130  Q
    ||||||||||||  ||||||||| ||||||||||||| ||||||||||||||| ||| |||||||||||||  ||||||| |||  | ||| |||||||     
T  5429867 tctcttctctccctttatcttttacttgtggttttgagcttttcactttgattcctagattagatctaggtgctgttattgttgattattgtttgtgttc 5429966  T
Q  131 gctttgatattggttattacttt 153  Q
     ||||||||||| ||| ||||||    
T  5429967 actttgatattgattactacttt 5429989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 24969834 - 24970028
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttga---acttttcactttgattactaaattagatctaggtattgttattat 114  Q
    |||||||||| ||||||||||||||| | ||||| ||||||| |||||||||     ||||||||| ||||| || ||||||||||||| |     || |    
T  24969834 ttcttggtgtgtttgtttctcttctcactttatcgtttgcttatggttttgagttttttttcacttagattagtagattagatctaggtgtctactttct 24969933  T
Q  115 tgtt-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||| ||| ||||| ||  |||||||||||||| ||||||||| |||| |||||||||||||||||||  |||| | |||||| | |||||||||||    
T  24969934 tgttgttggttgtgattattttgatattggttactactttcctttgct-cacacatctttgttttcatcagtgtga-ttttgagttcgaattcacaa 24970028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 29056528 - 29056610
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctag 101  Q
    |||||||||| |||||||||||| |||| |||||||||| |||||||||||   ||||||| |||||| ||| |||||||||||    
T  29056528 ttcttggtgtgtttgtttctcttttctctttatcttttgtttgtggttttgtgtttttcac-ttgattcctagattagatctag 29056610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 39593742 - 39593647
Alignment:
Q  7 tgggtatattattcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctagg 102  Q
    |||||| || ||||||||||| ||||| |||| ||||| ||||||||||||||| |||||||  |||||   |||| || ||| ||||||||||||    
T  39593742 tgggtaaataattcttggtgtgtttgtgtctcctctcttcttatcttttgcttgcggttttgtgcttttacatttggtttctagattagatctagg 39593647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 28468761 - 28468811
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||||||||||||||||| ||||||||| ||||||  ||||||||||||||    
T  28468761 tgctccacacatctttgtttacattggtgtgagtttt--atccgaattcacaa 28468811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 48142265 - 48142181
Alignment:
Q  132 ctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaataaattg 217  Q
    |||| |||||||||||||||||||| ||||||||||||||  ||||| |||||||| | || |  |||| ||||||||||| ||||    
T  48142265 ctttaatattggttattactttcctttgctccacacatctaagtttt-attggtgtgatttatttatcctaattcacaatacattg 48142181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 48142372 - 48142327
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttt 66  Q
    ||||||| ||||||||||||||||| |||||||||| |||||||||    
T  48142372 ttggtgtgtttgtttctcttctctctttatcttttgattgtggttt 48142327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 193
Target Start/End: Complemental strand, 24741800 - 24741765
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagttt 193  Q
    |||||||||||||||||||||||||||||| |||||    
T  24741800 tgctccacacatctttgttttcattggtgtgagttt 24741765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 29999708 - 29999653
Alignment:
Q  132 ctttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
    ||||||||||||||| ||||||||| ||||||||||||| | ||||  ||||||||    
T  29999708 ctttgatattggttactactttcctttgctccacacatcatagtttgtattggtgt 29999653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 21703834 - 21703784
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttg 68  Q
    |||||| ||| ||||||||||||||||| |||| ||||||||||| |||||    
T  21703834 ttcttgatgtgtttgtttctcttctctctttatattttgcttgtgattttg 21703784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 5350081 - 5350176
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt 118  Q
    ||||||| ||||||||||||||||| |||||||||| |||| || |||   ||||||| |||||| ||  || |||||||||| |||||||| |||||    
T  5350081 ttggtgtgtttgtttctcttctctcgttatcttttgtttgtagtcttgtgtttttcac-ttgattcctgtatgagatctaggt-ttgttattgttgtt 5350176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 31985871 - 31985917
Alignment:
Q  162 ccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||||||||||||| ||||||||| |||||||  |||||||||||||    
T  31985871 ccacacatctttgtttacattggtgtgagttttg--tccgaattcacaa 31985917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 187
Target Start/End: Original strand, 34496057 - 34496086
Alignment:
Q  158 tgctccacacatctttgttttcattggtgt 187  Q
    ||||||||||||||||||||||||||||||    
T  34496057 tgctccacacatctttgttttcattggtgt 34496086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 1983515 - 1983562
Alignment:
Q  139 attggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
    |||| ||||||||| ||| ||||||||||||||||||||||||| ||||    
T  1983515 attgattattactt-cctttgctccacacatctttgttttcatttgtgt 1983562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 9e-60; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 538197 - 538389
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| | |||||||||||||| |    
T  538197 ttggtgtgtttctttctcttctctctttatcttttgcttgtggttttgagcttttcactttgattactagattagatctagatgttgttattattgttgt 538296  T
Q  120 tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaata 212  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||||||| | ||||  |||||||| |||||||| || ||||||||||||    
T  538297 tgcttgtgtttactttgaaattggttattactttcctttgctccacacatcatagtttatattggtgtgagttttgagtctgaattcacaata 538389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 35 - 217
Target Start/End: Complemental strand, 42426215 - 42426030
Alignment:
Q  35 tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg-ttttgcttgtgtttg 131  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| | |||||||||||      
T  42426215 tctcttctctccctttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattattgatgttgcttgtgttca 42426116  T
Q  132 ctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaataaattg 217  Q
    ||||||||||||||| ||||||| | ||||||||||||| | ||||  ||| |||| |||||||| | ||||||||||| ||||||    
T  42426115 ctttgatattggttactactttcttttgctccacacatcatagtttgtatttgtgtgagttttgagttcgaattcacaacaaattg 42426030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 8565945 - 8565750
Alignment:
Q  19 tcttggtgtatttgttt-ctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgt 117  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||| |    
T  8565945 tcttggtgtgtttgttttctcttctctctttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattattat 8565846  T
Q  118 t----ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |    |||||||||||  ||||| ||||||||| ||||||||| ||||||||||||| | ||||  ||| |||| | |||||||||| |||||||||    
T  8565845 tgttgttgcttgtgttcactttgttattggttactactttcctttgctccacacatcatagtttatattagtgtga-ttttgaatccaaattcacaa 8565750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 47 - 205
Target Start/End: Complemental strand, 42428396 - 42428237
Alignment:
Q  47 ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtgtttgctttgatattggtt 145  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||| || |||||||||||  ||||||||||||||    
T  42428396 ttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattattattgttgcttgtgttcactttgatattggtt 42428297  T
Q  146 attactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaatt 205  Q
    | ||||||||| ||||||||||||| | ||||  |||||||| |||||||| | ||||||    
T  42428296 actactttcctttgctccacacatcatagtttgtattggtgtgagttttgagttcgaatt 42428237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 42927060 - 42927258
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttt------tgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttat 111  Q
    |||||||||| |||||||||||| |||||||||||||      |||||||||||||||  |||||||||||||| ||| ||||||||||||| |||||||    
T  42927060 ttcttggtgtgtttgtttctcttatctccttatcttttgcttttgcttgtggttttgagtttttcactttgattcctagattagatctaggtgttgttat 42927159  T
Q  112 tattgtt-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    | ||||| |||||||||||| |||||||||| |||  ||||||||| |||||||||||||||||||||| ||||| | | |||||| | |||||||||||    
T  42927160 tgttgttgttgcttgtgtttactttgatattagttgctactttcctttgctccacacatctttgttttcgttggtatga-ttttgagttcgaattcacaa 42927258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 35 - 210
Target Start/End: Original strand, 13488391 - 13488567
Alignment:
Q  35 tctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg-ttttgcttgtgtttgct 133  Q
    |||||||||||| | ||||||||||||||||||||  |||||||||||||||||| ||||||||||||| |||||||||||| | ||| |||||||  ||    
T  13488391 tctcttctctccctttcttttgcttgtggttttgagtttttcactttgattactagattagatctaggtgttgttattattgctattgattgtgttcact 13488490  T
Q  134 ttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||| |||||||||||||||||| | ||||||||||| |  |||  |||||||| || ||||| |||||||||||||    
T  13488491 ttgaaattggttattactttcctttactccacacatcatattttgtattggtgtgagatttgagtccgaattcacaa 13488567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 28750651 - 28750457
Alignment:
Q  21 ttggtgtatttgtt--tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| ||||||  ||||||||||||  |||| |||||||||||||||||  |||||||||| |||||||| ||||||||||||| ||||||||||||    
T  28750651 ttggtgtgtttgttcctctcttctctccctttatattttgcttgtggttttgtgcttttcacttggattactagattagatctaggtgttgttattattg 28750552  T
Q  117 tt-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    || |||||||||||| |||| | |||||||| ||||||||| ||||||||||||| |  |||  |||||||| |||||||| ||| |||||||||    
T  28750551 ttgttgcttgtgtttactttaaaattggttactactttcctttgctccacacatcataatttgtattggtgtgagttttgagtccaaattcacaa 28750457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 533941 - 534125
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| |||| |||||||||||  |||||||||||||||||||||||  |||||||||||||||||| |||||      || ||||||||||| || |    
T  533941 ttggtgtctttgcttctcttctctttttatcttttgcttgtggttttgagattttcactttgattactagattag------gtgttgttattattattgt 534034  T
Q  120 tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||||||||| | |||||| |||||||| ||||||||| ||||||||||||| | ||||  |||||||| |||||||| |||||||||||||    
T  534035 tgcttgtgtctactttgaaattggttactactttcctttgctccacacatcatagtttctattggtgtgagttttgagtccgaattcacaa 534125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 30682919 - 30682724
Alignment:
Q  21 ttggtgtatttgtt--tctcttctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| ||||||  ||||||||||||||  ||||||||||||||  ||||  ||||||||||||||| ||| ||||||||||||| |||||||| |||    
T  30682919 ttggtgtgtttgttcctctcttctctccttttatcttttgcttgtgaatttgtgcttttcactttgattcctagattagatctaggtgttgttattgttg 30682820  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     ||  ||||||||||  ||||||||||||||| ||||||||| ||||||||||||| | ||||  |||||||| |||||||| |||| ||||||||    
T  30682819 attattgcttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagtccgtattcacaa 30682724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 31183143 - 31183339
Alignment:
Q  21 ttggtgtatttgtttctct--tctctccttatcttttg-----cttgtggttttgaacttttcactttgattactaaattagatctaggtattgttatta 113  Q
    ||||||| |||||||||||  |||||| ||||||||||     ||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||||    
T  31183143 ttggtgtgtttgtttctctcttctctctttatcttttgaattgcttgtggttttgagcttttcactttgattactagattagatataggtgttgttatta 31183242  T
Q  114 ttgtt-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    || || |||||||||||  |||||||||| |||| ||||||||| ||||||||||||| | ||||  |||||||| | |||||| |||||||||||||    
T  31183243 tttttgttgcttgtgttccctttgatattagttactactttcctttgctccacacatcatggtttgtattggtgtga-ttttgagtccgaattcacaa 31183339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 47 - 212
Target Start/End: Original strand, 32637026 - 32637192
Alignment:
Q  47 ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg-ttttgcttgtgtttgctttgatattggtt 145  Q
    ||||||| |||||||| ||||||  |||||||||||||||||| ||||||||||||| |||||||||||| | ||||||||||||  | ||| ||| |||    
T  32637026 ttatcttgtgcttgtgattttgagtttttcactttgattactagattagatctaggtgttgttattattgatgttgcttgtgtttagtgtgaaatttgtt 32637125  T
Q  146 attactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaata 212  Q
    | ||||||||| | ||||||||||| | ||||  |||||||| ||||||||||||||||||||||||    
T  32637126 actactttcctttactccacacatcatagtttgtattggtgtgagttttgaatccgaattcacaata 32637192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 5887430 - 5887237
Alignment:
Q  21 ttggtgtatttgtttctct--tctctccttatcttttgctt--gtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||| |||||||||||||  |||||||| |  |||||| ||||||||||| ||||||| ||||| ||||||||||||    
T  5887430 ttggtgtgtttgtttctctcttctctctttatcttttgcttttgtggttttaagtttttcattttgattactagattagatttaggtgttgttattattg 5887331  T
Q  117 tt-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    || |||||||||||  ||||||||||||||| ||||||||| ||||||||| ||| | ||||  |||||||| | |||||| |||||||||||||    
T  5887330 ttgttgcttgtgttcactttgatattggttactactttcctttgctccacatatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 5887237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 35 - 210
Target Start/End: Complemental strand, 39468529 - 39468350
Alignment:
Q  35 tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgttt--tgcttgtgttt 130  Q
    ||||||||||||  ||||||| |||| |||||||||  ||||||||||||||| ||| |||||||||||||  ||||||| ||| ||  || |||||||     
T  39468529 tctcttctctccctttatcttgtgctcgtggttttgtgcttttcactttgatttctagattagatctaggtgctgttattgttgattattgtttgtgttc 39468430  T
Q  131 gctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     ||||||||||||||| ||||||||| ||||||||||||| | ||||  ||||||||||||||||| | |||||||||||    
T  39468429 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtaagttttgagttcgaattcacaa 39468350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 13239924 - 13240078
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  ||||||||||||||||||||   |||||||||||||||||| ||||||||||||| |||||||| |||    
T  13239924 ttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggttttgtgtttttcactttgattactagattagatctaggtgttgttattgttg 13240023  T
Q  117 tt-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
    || |||||||||||| |||| | |||||||| ||||||||| | |||||||||||    
T  13240024 ttgttgcttgtgtttactttaaaattggttactactttcctttactccacacatc 13240078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 16649827 - 16649676
Alignment:
Q  20 cttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg-tt 118  Q
    |||||||| |||||||||||| ||   ||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||| |||||||||||| |     
T  16649827 cttggtgtgtttgtttctcttttccgtttatcttttgcttgtggttttgtgcttttcactttgattactagattagatctaggtgttgttattattgcta 16649728  T
Q  119 ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
     | ||||||||  |||||||  |||||| ||||||||| |||||||||||||    
T  16649727 ctacttgtgttcactttgattgtggttactactttcctttgctccacacatc 16649676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 33831852 - 33832044
Alignment:
Q  21 ttggtgtatttgtttctct--tctctccttatcttttgcttgtggttttgaactttt-cactttgattactaaattagatctaggtattgttattattgt 117  Q
    ||||||| |||||||||||  |||||| ||||||||||||||||| ||||| ||||| |||||||||| ||| ||||||| |||||  || |||| ||||    
T  33831852 ttggtgtttttgtttctctcttctctctttatcttttgcttgtggctttgagctttttcactttgattcctagattagatttaggtgctgctattgttgt 33831951  T
Q  118 t-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    | |||||||||||  ||||||| ||||||| ||||||||| ||||||||||||| | ||||  ||| |||||| |||||| |||||||||||||    
T  33831952 tattgcttgtgttcactttgattttggttactactttcctttgctccacacatcatagtttgtatttgtgtaa-ttttgagtccgaattcacaa 33832044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 210
Target Start/End: Original strand, 19806551 - 19806727
Alignment:
Q  35 tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg-ttttgcttgtgtttg 131  Q
    ||||||||||||  ||||||||||||||||||||| | ||||||||||||||||||| ||||||| ||||| |||||||||||| | |||| | ||||      
T  19806551 tctcttctctccctttatcttttgcttgtggtttttagcttttcactttgattactagattagatttaggtgttgttattattgctattgcctatgttca 19806650  T
Q  132 ctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||| | |||||||| ||||||||| ||| ||||||||| | ||||  |||||||  |||||||| |||||||||||||    
T  19806651 ctttaaaattggttactactttcctttgccccacacatcatagtttgtattggtg--agttttgagtccgaattcacaa 19806727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 37439314 - 37439467
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||  ||||||| ||||||||||||||  ||||||| ||||||||||| |||||| |||||| ||||||||||||    
T  37439314 ttggtgtgtttgtttctctcttctctccctttatcttatgcttgtggttttgtgcttttcattttgattactagattagacctaggtgttgttattattg 37439413  T
Q  117 tt-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
    || |||||||||||| |||||| |||||||| ||| ||| | |||||||||||||    
T  37439414 ttgttgcttgtgtttactttgaaattggttactac-ttcttttgctccacacatc 37439467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 16452249 - 16452403
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctcc--ttatctttt-gcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattat 114  Q
    |||||||||| ||||||| |||||||| |  |||| |||| |||||||||||||| ||||||| ||||||| ||| ||||||||||  | |||||||| |    
T  16452249 ttcttggtgtgtttgtttatcttctcttcctttatttttttgcttgtggttttgagcttttcaatttgattcctagattagatctaactgttgttattgt 16452348  T
Q  115 tgttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatct 171  Q
    ||  |||||||||||| | || |||||||||| || |||||| | ||||||||||||    
T  16452349 tg--ttgcttgtgtttacgttaatattggttactattttcctttactccacacatct 16452403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 170
Target Start/End: Original strand, 13343249 - 13343387
Alignment:
Q  35 tctcttctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgttt 130  Q
    ||||||||||||||  || ||||||||||||||| |  ||||||||||||||| ||| ||||||||||||| |||||||| |||  | |||||||  ||     
T  13343249 tctcttctctccttttatattttgcttgtggttt-gtgcttttcactttgattcctagattagatctaggtgttgttattgttgattattgcttgcattc 13343347  T
Q  131 gctttgatattggttattactttcctctgctccacacatc 170  Q
     ||||| ||||||||| ||||||||| |||||||||||||    
T  13343348 actttgttattggttactactttcctttgctccacacatc 13343387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 36074038 - 36073867
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  || ||||||||||| ||| |  ||||||||||||||| ||| |||||||||||||  ||||||| |||    
T  36074038 ttggtgtgtttgtttctctcttctctccttttatgttttgcttgtgattt-gtgcttttcactttgattcctagattagatctaggtgctgttattgttg 36073940  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
     ||  ||||||  ||  ||||| ||||||||||||||||||| ||||||||||||| | ||||  ||||||||    
T  36073939 attattgcttgcattcactttgttattggttattactttcctttgctccacacatcatagtttgtattggtgt 36073867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 3075629 - 3075551
Alignment:
Q  132 ctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||||||||||||||||||||||||| ||||||||||||| | ||||  |||||||| |||||| | |||||||||||||    
T  3075629 ctttgatattggttattactttcctttgctccacacatcatagtttgtattggtgtgagtttttagtccgaattcacaa 3075551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 30182761 - 30182915
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  ||||| |||||||| |||||  |||||||||||| || ||| ||||||||||||| |||||||| |||    
T  30182761 ttggtgtgtttgtttctctcttctctccttttatcttgtgcttgtg-ttttgtgcttttcactttgtttcctagattagatctaggtgttgttattgttg 30182859  T
Q  117 --ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
      | ||| |||  ||  ||||| ||||||||| ||||||||| |||||||||||||    
T  30182860 attattgtttgcattcactttgttattggttactactttcctttgctccacacatc 30182915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 25412933 - 25413087
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  ||||||||||||||| ||||  |||||| |||||||| ||| ||||||| |||||  ||||||| |||    
T  25412933 ttggtgtgtttgtttctctcttctctccttttatcttttgcttgtgg-tttgtgcttttctctttgattcctagattagatataggtgctgttattgttg 25413031  T
Q  117 --ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
      | ||||||||| |  ||| ||||||| ||| || |||||| |||||||||||||    
T  25413032 attattgcttgtgctcacttggatattgattactaatttcctttgctccacacatc 25413087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 209
Target Start/End: Complemental strand, 42309931 - 42309827
Alignment:
Q  105 ttgttattattgtt-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaa 203  Q
    ||||| |||||||| ||||||||| || || |||||| |||||| |||||||| |||| || |||||||||||||||||| ||| | |||||| ||| ||    
T  42309931 ttgttgttattgttgttgcttgtgattactatgatataggttatcactttcctttgctgcatacatctttgttttcattgatgtga-ttttgagtcctaa 42309833  T
Q  204 ttcaca 209  Q
    ||||||    
T  42309832 ttcaca 42309827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 13695689 - 13695639
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttg 68  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||| ||||||    
T  13695689 ttcttggtgtgtttgtttctcttctctctttatcctttgcttgttgttttg 13695639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 15464395 - 15464345
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||||||||||||||||| ||||||||| ||||||  ||||||||||||||    
T  15464395 tgctccacacatctttgtttacattggtgtgagtttt--atccgaattcacaa 15464345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 26178112 - 26178215
Alignment:
Q  71 cttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgtttgctttgatattggttattactttcctctgctccacaca 168  Q
    ||||||||||||||| ||| ||||||||||||| ||||||| ||||  | |||||||      ||||| || |||||| ||||||||| |||||||||||    
T  26178112 cttttcactttgattcctagattagatctaggtgttgttatcattgattattgcttgcacacactttgttagtggttactactttcctttgctccacaca 26178211  T
Q  169 tctt 172  Q
    ||||    
T  26178212 tctt 26178215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 156
Target Start/End: Complemental strand, 9049317 - 9049210
Alignment:
Q  48 tatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtgtttgctttgatattggtta 146  Q
    |||||||||||||||||||||   ||||||| || ||| ||| ||||||| ||| | |||||||| ||||| || |||||| || |||||||||||||||    
T  9049317 tatcttttgcttgtggttttgtgtttttcac-ttaatttctatattagatttagat-ttgttattgttgttgtttcttgtggttactttgatattggtta 9049220  T
Q  147 ttactttcct 156  Q
     || ||||||    
T  9049219 ctattttcct 9049210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 24135711 - 24135661
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||||||||||||| ||||||||||||| ||||||  ||||| ||||||||    
T  24135711 tgctccacacatctttattttcattggtgtgagtttt--atccggattcacaa 24135661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 35387526 - 35387490
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagtttt 194  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  35387526 tgctccacacatctttgtttacattggtgtgagtttt 35387490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 40147556 - 40147608
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||||||||||||| | ||||  |||||||| |||||||| |||||||||||||    
T  40147556 tgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaa 40147608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 9e-60; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 29196382 - 29196186
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||||| |    
T  29196382 ttggtgtgtttgtttctcttctctctttatcttttgcttgtggttttgagcttttcactttgattaccagattagatctaggtgttgttattattgttgt 29196283  T
Q  120 tgcttg-tgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaataaat 215  Q
    |||||| ||||||||||||||||||||| ||||||||| ||||||||||||| | ||||  |||||||| || ||||| ||||||||||||| ||||    
T  29196282 tgcttgttgtttgctttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgagatttgagtccgaattcacaacaaat 29196186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 9666462 - 9666272
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgt-tt 119  Q
    ||||||| |||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||  |    
T  9666462 ttggtgtgtttgtttctcttatctctttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattattgtagt 9666363  T
Q  120 tgcttg-tgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||| | ||||||||||||||||||| ||||||||| ||||||||| ||| | ||||  |||||||| | |||||| |||||||||||||    
T  9666362 tgcttgttatttgctttgatattggttactactttcctttgctccacagatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 9666272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 21351002 - 21350813
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgt 117  Q
    |||||||||| ||||||||||||||| | ||||||| ||||||||||| ||| ||||||||||||||| ||| |||||||||| || |||||||| |||     
T  21351002 ttcttggtgtgtttgtttctcttctcactttatcttatgcttgtggttatgagcttttcactttgattcctagattagatctaagtgttgttattgttg- 21350904  T
Q  118 tttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     ||| |||||||| ||||||||||||||| ||||||||| |||| |||||||||||  |||||||||||| |||||||| |||||||||||||    
T  21350903 -ttgtttgtgtttactttgatattggttactactttcctttgcttcacacatcttt-atttcattggtgtgagttttgagtccgaattcacaa 21350813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 23391905 - 23391714
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttg-aacttttcactttgattactaaattagatctaggtattgttattattgtt- 118  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||    |||||||||||||||||| ||||||||||||| ||||||||||||||     
T  23391905 ttggtgtgtttgtttctcttctctctttatcttttgcttgtggttttgtgttttttcactttgattactagattagatctaggtgttgttattattgttg 23391806  T
Q  119 ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    || ||||||||  ||||||||||||||||||||||||| | ||||||||||| | ||||  |||||||| |||||||  | |||||||||||    
T  23391805 tttcttgtgttcactttgatattggttattactttccttttctccacacatcatagtttgtattggtgtgagttttgtgttcgaattcacaa 23391714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 31314617 - 31314784
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||| || ||||| |||||||||||||| |    
T  31314617 ttggtgtgtttgtttctcttctctctttatcttttgcttgtggttttgagcttttcactttgattactagattatatttaggtgttgttattattgttgt 31314716  T
Q  120 tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
    ||||||||||| |||| ||||| |||||||||||||| ||||||| ||||| | ||||  ||||||||    
T  31314717 tgcttgtgtttactttaatattagttattactttcctttgctccatacatcatagtttgtattggtgt 31314784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 44700472 - 44700289
Alignment:
Q  24 gtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgc 122  Q
    |||| ||||||||||||||||| ||||| |||||||||||||||||  |||||||||||||||||| ||||||||||||| |||||||||||||| ||||    
T  44700472 gtgtgtttgtttctcttctctctttatcctttgcttgtggttttgagtttttcactttgattactagattagatctaggtgttgttattattgttgttgc 44700373  T
Q  123 ttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattca 207  Q
    |||||||| ||||||||||||||| |||||| || |||||||  |||| | ||||  |||||||| | |||||| ||||||||||    
T  44700372 ttgtgtttactttgatattggttactacttttctttgctccatgcatcatagtttgtattggtgtga-ttttgagtccgaattca 44700289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 32891273 - 32891456
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgt 117  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||| ||||||||||||| ||||        |    
T  32891273 ttcttggtgtgtttgtttctcttctctccttatcttttgcttgtggttttgagtttttcactttgattcctatattagatctaggtgttgt--------t 32891364  T
Q  118 tttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     |||||||||||| |||| |||||||||| ||||||||| ||||||||||||| | | |||||||||||| |||||||| |||||| ||||||    
T  32891365 gttgcttgtgtttactttaatattggttactactttcctttgctccacacatcatag-tttcattggtgtgagttttgagtccgaagtcacaa 32891456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 29 - 206
Target Start/End: Complemental strand, 39153348 - 39153170
Alignment:
Q  29 tttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg-ttttgcttgtg 127  Q
    ||||||||||||||| | ||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| |   |||||||    
T  39153348 tttgtttctcttctccctttatcttgtgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattattgctgccgcttgtg 39153249  T
Q  128 tttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattc 206  Q
    ||| |||||| |||||||| ||||||||| ||||||||||||| | ||||  |||||||| ||||||||  ||||||||    
T  39153248 tttactttgaaattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagcccgaattc 39153170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 33 - 210
Target Start/End: Complemental strand, 22834986 - 22834809
Alignment:
Q  33 tttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtgtttg 131  Q
    ||||||||||  | ||||||||||||||||||||||  ||||||||||||||| ||| ||||||||||||| |||||||| ||||| || | |||||||     
T  22834986 tttctcttcttcctttatcttttgcttgtggttttgtgcttttcactttgattcctagattagatctaggtgttgttattgttgttattacctgtgttta 22834887  T
Q  132 ctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||||||||||||||| ||||||||| ||||||||||||| | ||||  |||||||| | |||||| |||||||||||||    
T  22834886 ctttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 22834809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 761019 - 761209
Alignment:
Q  21 ttggtgtatttgtttctc--ttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt 118  Q
    ||||||| ||||||||||  ||||||| ||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||  || |||| |||||    
T  761019 ttggtgtgtttgtttctctcttctctctttatcttttgcttgtggttttgagcttttcactttgattcctagattagatctaggtgctgctattgttgtt 761118  T
Q  119 -ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     ||||||| |||  ||||||| ||||||| ||||||||| ||||||||||||| | ||||  ||||||||  | ||||| |||||||||||||    
T  761119 attgcttgagttcactttgattttggttactactttcctttgctccacacatcatagtttgtattggtgt--gatttgagtccgaattcacaa 761209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 188
Target Start/End: Original strand, 7762454 - 7762611
Alignment:
Q  35 tctcttctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgttt 130  Q
    ||||||||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||||||||||||| |||||||| |||  | || ||||||||     
T  7762454 tctcttctctccttttatcttttgcttgtggttttgtgcttttcactttgattcctaaattagatctaggtgttgttattgttgattattacttgtgttc 7762553  T
Q  131 gctttgatattggttattactttcctctgctccacacatctttgttttcattggtgta 188  Q
     ||||||||||||||| ||||||||| ||||||||||||| | ||||  |||||||||    
T  7762554 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgta 7762611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 29811040 - 29811235
Alignment:
Q  21 ttggtgtatttgtt--tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| ||||||  ||||||||||||  ||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||  ||||||| |||    
T  29811040 ttggtgtgtttgttcatctcttctctccctttatcttttgcttgtggttttgagcttttcactttgattcctagattagatctaggtgctgttattgttg 29811139  T
Q  117 --ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
      | |||||||||||  |||||| |||||||| ||||||||| ||||||||| ||| |  |||  |||||||| |||||||| | |||||||||||    
T  29811140 attattgcttgtgttctctttgaaattggttactactttcctttgctccacaaatcatattttgtattggtgtgagttttgagttcgaattcacaa 29811235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 16499201 - 16499340
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtttt 120  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| ||| ||||||| ||||| ||||||        ||    
T  16499201 ttggtgtatttgtttctcttctctctttatcttttgcttgtggttttgtacttttca-tttgattcctagattagatttaggtgttgtta--------tt 16499291  T
Q  121 gcttgtgtttgctttgatattggttattactttcctctgctccacacat 169  Q
    |||||||||| ||||||| ||||||| ||||||||| ||||||||||||    
T  16499292 gcttgtgtttactttgatgttggttactactttcctttgctccacacat 16499340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 35 - 210
Target Start/End: Original strand, 29813251 - 29813428
Alignment:
Q  35 tctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgtttgc 132  Q
    ||||||||| | |||||||||| |||||||||||| |||||||||||||||  || |||||||||||||  ||||||| |||  | ||| |||||||  |    
T  29813251 tctcttctccctttatcttttggttgtggttttgagcttttcactttgattcttagattagatctaggtgctgttattgttgattattgtttgtgttcac 29813350  T
Q  133 tttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||||||||| |||| |||||| || ||||||||||||| | ||||  |||||||| |||||||| |||||||||||||    
T  29813351 tttgatattagttactacttttctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaa 29813428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 23410325 - 23410133
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttga--acttttcactttgattactaaattagatctaggtattgttattattgtt 118  Q
    ||||||| ||||||| | ||||||| |||||||||||||||||||||||    |||| ||||||||||||| ||||||||||||| |||||| |||| ||    
T  23410325 ttggtgtgtttgtttatattctctctttatcttttgcttgtggttttgagttttttttactttgattactagattagatctaggtgttgttaatattttt 23410226  T
Q  119 -ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     |||||||||||  |||||||||  |||| ||||||||| || |||||||||| | ||||  |||| ||| |||||||  |||||||||||||    
T  23410225 gttgcttgtgttcactttgatatatgttactactttcctttgatccacacatcatagtttgtattgatgtgagttttgtgtccgaattcacaa 23410133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 40735555 - 40735709
Alignment:
Q  21 ttggtgtatttgtt--tctcttctctcctt-atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg- 116  Q
    ||||||||||||||  |||||||||||||| ||||||||||||||| ||||  |||||||||||| || ||| |||||||||||||  ||||||| |||     
T  40735555 ttggtgtatttgttcctctcttctctcctttatcttttgcttgtggatttgtgcttttcactttggttcctatattagatctaggtgctgttattgttga 40735654  T
Q  117 -ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
     | ||| |||||||  ||||||||||||||| ||||||||| |||||||||||||    
T  40735655 ttattgtttgtgttcactttgatattggttactactttcctttgctccacacatc 40735709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 51352132 - 51351937
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg- 116  Q
    |||||| ||| ||||||||||||||||| ||||||||| ||||||||||||   |||||| ||||||| ||| ||||||||||||| |||||||| |||     
T  51352132 ttcttgatgtgtttgtttctcttctctctttatcttttacttgtggttttgtgtttttca-tttgattcctagattagatctaggt-ttgttattgttgc 51352035  T
Q  117 ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaataaatt 216  Q
    |  |||||||| || |||||||||||||||  |||||||| ||||||||||||| | || || |||| ||| | |||||| ||||||||||||| |||||    
T  51352034 tgctgcttgtgattactttgatattggttaccactttcctttgctccacacatcgtagtatt-attgatgtga-ttttgagtccgaattcacaacaaatt 51351937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 27305709 - 27305521
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgt 117  Q
    ||||| |||| ||||||||||||||||  |||||||||| |||||||||||   |||||||||| | | ||| ||||||||||||| | |||||| ||||    
T  27305709 ttctttgtgtgtttgtttctcttctctatttatcttttgtttgtggttttgtgtttttcacttt-actcctagattagatctaggt-tggttattgttgt 27305612  T
Q  118 t-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    | ||||||||  || ||||||||||||||| ||||||||| ||||||||||||| | ||||  |||||||| | |||||| |||||||||||||    
T  27305611 tgttgcttgttgttactttgatattggttactactttcctttgctccacacatcatagttt--attggtgtga-ttttgagtccgaattcacaa 27305521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 19683884 - 19683706
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  ||||||||||||||||||||   |||||||||| ||| ||| |||||||||||||  ||||||| |||    
T  19683884 ttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggttttgtgtttttcacttttattcctagattagatctaggtgctgttattgttg 19683785  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttt 193  Q
     ||  ||||||||||  ||||||||||||||| ||||||||| ||||||| ||||| | ||||  |||||||| |||||    
T  19683784 attattgcttgtgttcactttgatattggttactactttcctttgctccaaacatcatagtttgtattggtgtgagttt 19683706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 7764637 - 7764832
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  |||||||| |||||||||||  ||||||||||||||| | | |||||||||||||  ||||||| |||    
T  7764637 ttggtgtgtttgtttctctcttctctccttttatcttttgtttgtggttttgtgcttttcactttgattccaagattagatctaggtgctgttattgttg 7764736  T
Q  117 --ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatcc-gaattcacaa 210  Q
      | |||||||||||  ||||||||||||||| ||||||||| | || |||||||| | ||||  |||||||| |||||||| ||| ||||||||||    
T  7764737 attattgcttgtgttcactttgatattggttactactttcctttacttcacacatcatagtttgtattggtgt-agttttgagtccggaattcacaa 7764832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 35 - 210
Target Start/End: Original strand, 40734686 - 40734863
Alignment:
Q  35 tctcttctctcctt-atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattatt--gttttgcttgtgtttg 131  Q
    |||||||||||||| ||||||||||||||| ||||  |||| |||||||||| ||| |||||||||||||  ||||||| ||   | || ||||||||      
T  40734686 tctcttctctcctttatcttttgcttgtggatttgtgctttgcactttgattcctagattagatctaggtgctgttattttttattatttcttgtgttca 40734785  T
Q  132 ctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||||||||||||||| ||||||||| ||||||||||||| | ||||  |||||||| | ||||||  ||||||||||||    
T  40734786 ctttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtga-ttttgagaccgaattcacaa 40734863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 51398986 - 51399180
Alignment:
Q  21 ttggtgtatttgtt--tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| ||||||  ||||||||||||  |||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||  ||||||| |||    
T  51398986 ttggtgtgtttgttcctctcttctctccctttatcttttgcttgtggttttgtacttttcactttgattcctagattagatctaggtgctgttattgttg 51399085  T
Q  117 --ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
      | ||||| ||| |  ||||||||||| ||  ||||||||| ||||||| ||||| | ||||  |||||| | | |||||| |||||||||||||    
T  51399086 attattgctagtgctcactttgatattgttttctactttcctttgctccatacatcatagtttgtattggtatga-ttttgagtccgaattcacaa 51399180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 5236453 - 5236254
Alignment:
Q  21 ttggtgtatttgtt--tctcttctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| ||||||  ||||||||||||||  ||||||||||||||| ||||  ||||||||||||||| ||| ||||||||||||   | ||||| |||    
T  5236453 ttggtgtgtttgttcctctcttctctccttttatcttttgcttgtggatttgtgcttttcactttgattcctagattagatctaggagctcttattgttg 5236354  T
Q  117 --ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaataaa 214  Q
      | |||||||||||  ||||||||| | ||| ||||||||| | ||||||||||| | ||||  |||||||| | |||||| ||||||||||||| |||    
T  5236353 attattgcttgtgttcactttgatatcgattactactttcctgtactccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaacaaa 5236255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 2075074 - 2074885
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgt 117  Q
    |||| ||||| ||| ||||||||||||| ||||||||||||||||||||||   ||||||||| | || ||| |||| |||| ||| || ||||| || |    
T  2075074 ttctgggtgtgtttatttctcttctctctttatcttttgcttgtggttttgtgtttttcactt-gtttcctagattaaatctgggt-ttattattgttat 2074977  T
Q  118 t-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    | ||||||||| ||  |||||||||||||| ||||||||| ||||||||||||| | ||||| |||||||| | |||||  |||||||||||||    
T  2074976 tgttgcttgtggttattttgatattggttactactttcctttgctccacacatcatagtttt-attggtgtga-ttttgggtccgaattcacaa 2074885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 187
Target Start/End: Original strand, 29682547 - 29682700
Alignment:
Q  35 tctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtgtttgct 133  Q
    ||||||||| | |||||||||||||||||||||||  |||||||||||||| |||  ||||||||||||  || |||| ||||| |||||||| ||  ||    
T  29682547 tctcttctccctttatcttttgcttgtggttttgagtttttcactttgattcctaggttagatctaggtgctgctattgttgttattgcttgtattcact 29682646  T
Q  134 ttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
    || || ||| ||| ||||||||| ||||||||||||| | ||||  ||||||||    
T  29682647 ttaattttgattactactttcctttgctccacacatcatagtttgtattggtgt 29682700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 9636066 - 9635948
Alignment:
Q  71 cttttcactttgattactaaattagatctaggtattgttattattgttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacaca 168  Q
    ||||||||||||||| ||| |||||||||||||  ||||||| ||| ||  ||||||||||  ||||||||||||||| ||||||||| |||||||||||    
T  9636066 cttttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccacaca 9635967  T
Q  169 tctttgttttcattggtgt 187  Q
    || | ||||  ||||||||    
T  9635966 tcatagtttgtattggtgt 9635948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 5260318 - 5260164
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  || ||||||||||||||| |  ||||||||||||||| ||||||||||||||||| |||||||| |||    
T  5260318 ttggtgtgtttgtttctctcttctctccttttatattttgcttgtggttt-gtgcttttcactttgattcctaaattagatctaggtgttgttattgttg 5260220  T
Q  117 --ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
      | |||||||   |  ||||| ||||||||| ||||||||| |||||||||||||    
T  5260219 attattgcttgcactcactttgttattggttactactttcctttgctccacacatc 5260164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 187
Target Start/End: Original strand, 9581471 - 9581627
Alignment:
Q  35 tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgttt 130  Q
    ||||||||||||  |||| || ||||||||||||||  |||||||||||||||  || |||||||||||||  ||||||| |||  | ||||||||| |     
T  9581471 tctcttctctccctttattttgtgcttgtggttttgtgcttttcactttgattcatagattagatctaggtgctgttattgttgattattgcttgtgctc 9581570  T
Q  131 gctttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
     ||||||||||||||| ||||||||| |||| |||||||| | ||||  ||||||||    
T  9581571 actttgatattggttactactttcctttgcttcacacatcatagtttatattggtgt 9581627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 37408631 - 37408786
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  |||||||||||||| ||| |  ||||||||||||||| ||| |||||||||||||  ||||||| |||    
T  37408631 ttggtgtgtttgtttctctcttctctccttttatcttttgcttgtgatttagtgcttttcactttgattcctagattagatctaggtgctgttattgttg 37408730  T
Q  117 --ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
      | ||| ||||| |  |||| |||||||||| ||||||||| |||||||||||||    
T  37408731 attattgtttgtgctcactttaatattggttactactttcctttgctccacacatc 37408786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 53921502 - 53921422
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatc 98  Q
    ||||| |||| ||||||||||||||||| |||| ||||| |||||||||||| ||||||||||||||| ||| ||||||||    
T  53921502 ttcttagtgtgtttgtttctcttctctctttatattttgtttgtggttttgagcttttcactttgattcctagattagatc 53921422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 5258139 - 5257985
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  || ||||||||||||||| |  ||||||||||||||| ||| |||||||||||||  ||||||| |||    
T  5258139 ttggtgtgtttgtttctctcttctctccttttatattttgcttgtggttt-gtgcttttcactttgattcctagattagatctaggtgctgttattgttg 5258041  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
     ||  ||||||  ||  ||||| ||||||||| ||||||||| |||||||||||||    
T  5258040 attattgcttgcattcactttgttattggttactactttcctttgctccacacatc 5257985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 9634763 - 9634666
Alignment:
Q  71 cttttcactttgattactaaattagatctaggtattgttattattgttt--tgcttgtgtttgctttgatattggttattactttcctctgctccaca 166  Q
    ||||||||||||||| ||| |||||||||||||  ||||||| ||| ||  ||||||||||  ||||||||||||||| ||||||||| |||||||||    
T  9634763 cttttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccaca 9634666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 32744432 - 32744342
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt 118  Q
    ||||||| |||||||||| | |||| |||||||||||||||||||||       ||||||||||| ||| ||||||||||||| ||||||| ||||||    
T  32744432 ttggtgtgtttgtttctcatatctctttatcttttgcttgtggtttt-------tcactttgatttctagattagatctaggtgttgttatcattgtt 32744342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 45095336 - 45095490
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    |||| ||||||||||||||  |||||||||  |||||||||||||||||| |   ||| | ||||||||  || |||||||||| ||  ||||||| |||    
T  45095336 ttggcgtatttgtttctctattctctccttttatcttttgcttgtggttt-gtgttttactctttgattcatagattagatctatgtgctgttattgttg 45095434  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
     ||  |||||||| |  ||||||||||||||| ||||||||| ||||| |||||||    
T  45095435 attattgcttgtgctcactttgatattggttactactttcctttgctctacacatc 45095490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 1305813 - 1305763
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||||||||||||||||| ||||||||| ||||||  ||||||||||||||    
T  1305813 tgctccacacatctttgtttacattggtgtgagtttt--atccgaattcacaa 1305763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 1309718 - 1309668
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||||||||||||||||| ||||||||| ||||||  ||||||||||||||    
T  1309718 tgctccacacatctttgtttacattggtgtgagtttt--atccgaattcacaa 1309668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 32143185 - 32143135
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||||||||||||||||| ||||||||| ||||||  ||||||||||||||    
T  32143185 tgctccacacatctttgtttacattggtgtgagtttt--atccgaattcacaa 32143135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 2671824 - 2671860
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagtttt 194  Q
    |||||||||||||||||||||||||||||| ||||||    
T  2671824 tgctccacacatctttgttttcattggtgtgagtttt 2671860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 8477224 - 8477188
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagtttt 194  Q
    |||||||||||||||||||||||||||||| ||||||    
T  8477224 tgctccacacatctttgttttcattggtgtgagtttt 8477188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 187
Target Start/End: Original strand, 8739302 - 8739331
Alignment:
Q  158 tgctccacacatctttgttttcattggtgt 187  Q
    ||||||||||||||||||||||||||||||    
T  8739302 tgctccacacatctttgttttcattggtgt 8739331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 187
Target Start/End: Original strand, 9091540 - 9091569
Alignment:
Q  158 tgctccacacatctttgttttcattggtgt 187  Q
    ||||||||||||||||||||||||||||||    
T  9091540 tgctccacacatctttgttttcattggtgt 9091569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 40373033 - 40373069
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagtttt 194  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  40373033 tgctccacacacctttgttttcattggtgtgagtttt 40373069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 3e-56; HSPs: 52)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 40122192 - 40122003
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  40122192 ttggtgtgtttgtttctcttctctctttatcttttgcttgtggttttgagcttttcactttgattactaaattagatctaggtgttgttattattgttgt 40122093  T
Q  120 tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||||||||||  ||| ||||||||||| ||||||||| |||||||| |||| | ||||  |||||||| | |||||| |||||||||||||    
T  40122092 tgcttgtgttcacttagatattggttactactttcctttgctccacgcatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 40122003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 50167171 - 50167021
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |    
T  50167171 ttggtgtgtttgtttctcttctctctttatcttttgcttgtggttttgaacttttcactttgattactagattagatctaggtgttgttattattgttgt 50167072  T
Q  120 tgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
    | ||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  50167071 ttcttgtgtttactttgatattggttactactttcctttgctccacacatc 50167021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 13137964 - 13137782
Alignment:
Q  29 tttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtg 127  Q
    ||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||    
T  13137964 tttgtttctcttctctctttatcttttgcttgtggttttgaggttttcactttgattactagattagatctaggtgttgttattattgttgttgcttgtg 13137865  T
Q  128 tttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||| |||||| |||||||| ||||||||| ||||||||||||| |  |||  |||||||| |||||||| |||||||| ||||    
T  13137864 tttactttgaaattggttactactttcctttgctccacacatcataatttgtattggtgtgagttttgagtccgaatttacaa 13137782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 16455790 - 16455982
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgt 117  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||  |||||||||||||||| | ||||||||||  | |||||||||||||    
T  16455790 ttcttggtgtatttgtttctcttctctctttatcttttacttgtggttttgagtttttcactttgattaccagattagatctatatgttgttattattgt 16455889  T
Q  118 t-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    | ||||||  |||| ||||||||||||||| ||||||| | |||| |||| |||||||||||||||||||||| |||||| |||||||||||||    
T  16455890 tgttgcttacgtttactttgatattggttactactttcatttgctacacaaatctttgttttcattggtgtaa-ttttgagtccgaattcacaa 16455982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 45644350 - 45644160
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    |||||||  |||||||||||||||| |||||||||| |||||||||||| ||||||||||||||| ||| ||||||||||| | |||||||||||||| |    
T  45644350 ttggtgtgcttgtttctcttctctctttatcttttgtttgtggttttgagcttttcactttgattgctagattagatctagatgttgttattattgttgt 45644251  T
Q  120 tgcttg-tgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||| ||||||||||||||||||||| ||||||||| ||||||||||||| | ||||  ||| |||| | |||||| |||||||||||||    
T  45644250 tgcttgttgtttgctttgatattggttactactttcctttgctccacacatcatagtttgtatttgtgtga-ttttgagtccgaattcacaa 45644160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 834163 - 833972
Alignment:
Q  21 ttggtgtatttgtttctct--tctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt 118  Q
    ||||||| |||||||||||  |||||| ||||||||||||||||||||||| ||||||||||||||| | | ||||||||| ||| |||||||| |||||    
T  834163 ttggtgtgtttgtttctctcttctctctttatcttttgcttgtggttttgagcttttcactttgattcccagattagatcttggtgttgttattgttgtt 834064  T
Q  119 -ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     |||||||||||| ||||||||||||||| ||||||||| ||||||||||||| | ||||  |||||||| | |||||| |||||||||||||    
T  834063 attgcttgtgtttactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 833972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 23555265 - 23555073
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgt 117  Q
    |||||||||  ||||||||||||||||| |||| |||||||||||||||||| ||||||||| ||||| ||||||||||||||||| |||||||| ||||    
T  23555265 ttcttggtgcgtttgtttctcttctctctttatgttttgcttgtggttttgagcttttcactatgattcctaaattagatctaggtgttgttattgttgt 23555166  T
Q  118 t-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    | |||||||||||| |||||| |||| ||| |||||| || ||||||||||||| ||||||  |||||||  | |||||| |||||||||||||    
T  23555165 tgttgcttgtgtttactttgacattgattactacttttctttgctccacacatcattgtttctattggtgcga-ttttgagtccgaattcacaa 23555073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 50169206 - 50169039
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||||||||| |    
T  50169206 ttggtgtgtttgtttctcttctctctttatcttttgcttgtggttttgagcttttcactttgattactagattagatataggtgttgttattattgttgt 50169107  T
Q  120 tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
    || |||||||  ||||||||||||||| ||||||| | |||| |||||||| | ||||  ||||||||    
T  50169106 tgtttgtgttcactttgatattggttactactttcatttgcttcacacatcatagtttgtattggtgt 50169039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 35 - 210
Target Start/End: Complemental strand, 28223401 - 28223223
Alignment:
Q  35 tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtgtttg 131  Q
    ||||||||||||  |||||||||||||||| |||||   |||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||      
T  28223401 tctcttctctccctttatcttttgcttgtgattttgtgtttttcactttgattactagattagatctaggtgttgttattattgttgttgcttgtgttca 28223302  T
Q  132 ctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||||||||||||||| ||||||| | ||||||||||||| | ||||  |||||| | |||||||| |||||||||||||    
T  28223301 ctttgatattggttactactttcgtttgctccacacatcatagtttgtattggtctgagttttgagtccgaattcacaa 28223223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 28265550 - 28265365
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||| ||||||||||||| ||||||||||| | |||||||||||||| |    
T  28265550 ttggtgtgtttgtttctcttctctctttatcttttggttgtggttttgagctttttactttgattactagattagatctagatgttgttattattgttgt 28265451  T
Q  120 tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattc 206  Q
    ||||||||||  |||||||||||| || || |||||| | ||||||||||| | ||||  |||||||| | |||||| |||||||||    
T  28265450 tgcttgtgttcactttgatattggctactattttcctttactccacacatcatagtttgtattggtgtga-ttttgagtccgaattc 28265365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 35 - 170
Target Start/End: Complemental strand, 196887 - 196751
Alignment:
Q  35 tctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtgtttgct 133  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||| ||||||| ||||| |||||||||||||| |||||||||||  ||    
T  196887 tctcttctctctttatcttttgcttgtggttttgagcttctcactttgattactagattagatgtaggtgttgttattattgttgttgcttgtgttcact 196788  T
Q  134 ttgatattggttattactttcctctgctccacacatc 170  Q
    ||||||||||||| || |||||| |||||||||||||    
T  196787 ttgatattggttactattttcctttgctccacacatc 196751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 41361085 - 41361276
Alignment:
Q  19 tcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt 118  Q
    ||||||||| ||||||||| ||||| | |||||||||| |||||||||||| ||||| ||||||||| ||| ||||||| ||||| |||||||| |||||    
T  41361085 tcttggtgtgtttgtttcttttctcactttatcttttgtttgtggttttgagctttttactttgattcctagattagatataggtgttgttattgttgtt 41361184  T
Q  119 -ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     || ||||||||| ||||||||||| ||| ||||||||| ||||||||||||| | ||||| ||||||   |||||||| |||||||||||||    
T  41361185 gttacttgtgtttactttgatattgattaatactttcctttgctccacacatcatagtttt-attggttagagttttgagtccgaattcacaa 41361276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 3847117 - 3846962
Alignment:
Q  21 ttggtgtatttgtttctct--tctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt 118  Q
    ||||||| |||||||||||  |||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||| ||    
T  3847117 ttggtgtgtttgtttctctcttctctctttatcttttgcttgtggttttgagcttttcactttgattactatattagatctaggtgttgttattattatt 3847018  T
Q  119 ----ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
        |||||||||||  ||||||||||||||| ||||||||| | |||||||||||    
T  3847017 gttgttgcttgtgttcactttgatattggttactactttcctttactccacacatc 3846962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 35 - 210
Target Start/End: Complemental strand, 28220206 - 28220028
Alignment:
Q  35 tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtgtttg 131  Q
    ||||||||||||  ||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||| |||||||||||||| ||| |||||||      
T  28220206 tctcttctctccctttatcttttgcttgtggttttgtgcttttcactttgattactagattagatctaggtgttgttattattgttgttgtttgtgttca 28220107  T
Q  132 ctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||| |||||||||| || ||| || || |||||||||| | ||||  |||||||| |||||||| |||||||||||||    
T  28220106 ctttaatattggttactaattttctttgttccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaa 28220028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 1833685 - 1833874
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||| | ||||||| ||||||||||||||| ||||||  ||||||||||||||||||| ||||||||||||| |||||||||||||| |    
T  1833685 ttggtgtgtttgtttattttctctctttatcttttgcttgtagttttgtgcttttcactttgattactagattagatctaggtgttgttattattgttgt 1833784  T
Q  120 tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||||||||||| |||||| ||||||||  |||||||| | ||||||| ||| | ||||  |||||||| | | |||| |||||||||||||    
T  1833785 tgcttgtgtttactttgaaattggttacgactttcctttactccacagatcatagtttgtattggtgtga-tattgagtccgaattcacaa 1833874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 46065090 - 46065276
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| | |||||| || |||| || ||||||||||||| |||||||||||||| |    
T  46065090 ttggtgtgtttgtttctcttctctctttatcttttgcttgtggttttgagcctttcacatt-attagtagattagatctaggtgttgttattattgttgt 46065188  T
Q  120 tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||||||| ||| |||||| ||||||||  ||| || | ||||||||||||||||||||||||| ||||  ||||||| |||||||||||||    
T  46065189 tgcttgtatttactttga-attggttacaactatcgtttgctccacacatctttgttttcatt-gtgt-ggttttgagtccgaattcacaa 46065276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 30476442 - 30476248
Alignment:
Q  21 ttggtgtatttgtt--tctcttctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| ||||||  ||||||||||||||  ||||||| ||||||||||||| |||||||||||||||| || ||||| |||| || ||||||||||||    
T  30476442 ttggtgtgtttgttcctctcttctctccttttatcttttacttgtggttttgagcttttcactttgattattagattaggtctaagtgttgttattattg 30476343  T
Q  117 tt-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    || |||||||||||| |||||| |||||||| ||||||||| | ||||||||||  | ||||  |||||||| |||||||| | |||||||||||    
T  30476342 ttgttgcttgtgtttactttgaaattggttactactttcctttactccacacattatagtttgtattggtgtgagttttgagttcgaattcacaa 30476248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 10925406 - 10925588
Alignment:
Q  29 tttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgt 126  Q
    ||||||| ||||||||| |||||||||||||||||||||||  ||||| |||||||||||| ||||||||||||| |||||||| |||  | ||||||||    
T  10925406 tttgtttatcttctctctttatcttttgcttgtggttttgagtttttccctttgattactagattagatctaggtgttgttattgttgattattgcttgt 10925505  T
Q  127 gtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||  ||||||||||| ||| ||||||||| ||||||||||| | | ||||  |||| ||| | |||||| |||||||||||||    
T  10925506 gttcactttgatattgattactactttcctttgctccacacaacatagtttgtattgttgtga-ttttgagtccgaattcacaa 10925588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 42 - 206
Target Start/End: Complemental strand, 4552619 - 4552454
Alignment:
Q  42 tctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtgtttgctttgatat 140  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||| || |||||||||||||| || ||||||||| |||||| ||    
T  4552619 tctctttatcttttgcttgtggttttgagcttttcactttgattactagattagatctatgtgttgttattattgttgttacttgtgtttactttgaaat 4552520  T
Q  141 tggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattc 206  Q
    |||||| ||||||||| | || ||| |||| | ||||  |||||||| |  ||||| |||||||||    
T  4552519 tggttactactttcctttacttcacgcatcatagtttgtattggtgtgaaatttgagtccgaattc 4552454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 37 - 215
Target Start/End: Complemental strand, 8550760 - 8550581
Alignment:
Q  37 tcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgtttgctt 134  Q
    ||||||||| ||||||| |||||||| |||||   |||||||||||||| ||| ||||||||||||| |||||||| |||  | |||||||||||  |||    
T  8550760 tcttctctctttatcttgtgcttgtgattttgtgtttttcactttgattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactt 8550661  T
Q  135 tgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaataaat 215  Q
    |||||||||||| ||||||||| ||||||||||||| | ||||  |||||||| | |||||| ||||||||||||| ||||    
T  8550660 tgatattggttactactttcctttgctccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaacaaat 8550581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 37559863 - 37559666
Alignment:
Q  21 ttggtgtatttgtt--tctcttctctcc---ttatcttttgcttgtggttttgaacttttcactttgattactaaatt-agatctaggtattgttattat 114  Q
    ||||||| ||||||  ||||||||||||   ||||||||||||||||||||||  ||||||||||||||| ||| ||| ||||||||||  ||||||| |    
T  37559863 ttggtgtgtttgttcctctcttctctcccctttatcttttgcttgtggttttgtgcttttcactttgattcctagatttagatctaggtgctgttattgt 37559764  T
Q  115 tgttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    || ||  ||||||||||  ||||||||||||||| ||||||||| ||||||| ||||| | ||||  |||||||| |||||||| |||||||||||||    
T  37559763 tgattattgcttgtgttcactttgatattggttactactttcctttgctccagacatcatagtttatattggtgtgagttttgagtccgaattcacaa 37559666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 13659332 - 13659153
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtttt 120  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| ||| ||||||| ||||| ||||||        ||    
T  13659332 ttggtgtatttgtttctcttctctctttatcttttgcttgtggttttgtacttttca-tttgattcctagattagatttaggtgttgtta--------tt 13659242  T
Q  121 gcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||||||| ||||||| ||||||| ||||||||| ||||||||||||  | ||||  |||| ||| | |||||| |||||||||||||    
T  13659241 gcttgtgtttactttgatgttggttactactttcctttgctccacacattatagtttgtattgatgtga-ttttgagtccgaattcacaa 13659153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 3157037 - 3157192
Alignment:
Q  21 ttggtgtatttgtt--tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| ||||||  ||||||||||||  ||||||||||||||||||||||  ||||||||||||||| ||| |||||||||||||  ||||||| |||    
T  3157037 ttggtgtgtttgttcctctcttctctccctttatcttttgcttgtggttttgtgcttttcactttgattcctagattagatctaggtgctgttattgttg 3157136  T
Q  117 --ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
      | |||||||||||  ||||||||||||||| ||||||||| |||||||||||||    
T  3157137 attattgcttgtgttcactttgatattggttactactttcctttgctccacacatc 3157192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 15820479 - 15820660
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtttt 120  Q
    ||||||| |||||||||||||||||||||||  ||||||||| || ||| ||||||  ||||||| ||| ||||||||||||| ||||| |     | ||    
T  15820479 ttggtgtgtttgtttctcttctctccttatccattgcttgtgtttatgagcttttctatttgattcctatattagatctaggtgttgttgt-----tgtt 15820573  T
Q  121 gcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaat 211  Q
    |||||||||| |||||||||| |||| ||||||||| ||||||||||||||  ||||  |||||||  |||||||| ||||||||||||||    
T  15820574 gcttgtgtttactttgatattagttactactttcctttgctccacacatctaagttt--attggtg--agttttgagtccgaattcacaat 15820660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 927975 - 927787
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgatta-ctaaattagatctaggtattgttattattg 116  Q
    ||||| |||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| || ||||| || |||    
T  927975 ttctttgtgtgtttgtttctcttctctctttatcttttgtttgtggttttgaacttttcactttgattatctatattagatctaagttttgttgttgttg 927876  T
Q  117 ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
      ||| ||||| || |||||||||||||||  |||| ||| | ||||||||||| | ||||  |||| ||| | |||||| |||||||||||||    
T  927875 --ttgtttgtgattactttgatattggttaccacttccctttactccacacatcatagttt--attgatgtga-ttttgagtccgaattcacaa 927787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 187
Target Start/End: Complemental strand, 8870698 - 8870551
Alignment:
Q  42 tctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg-ttttgcttgtgtttgctttgatat 140  Q
    |||| |||||||||||||||||||||| | |||||||||||||| ||| ||| ||||||||| || || |||||| ||||||||||| || ||||||||     
T  8870698 tctctttatcttttgcttgtggttttgtatttttcactttgattcctagatttgatctaggttttttttttattgtttttgcttgtgattactttgatac 8870599  T
Q  141 tggttattactttcctctgctccacacatctttg-ttttcattggtgt 187  Q
    | |||| ||||||||| || ||||||||| |||| |||||||||||||    
T  8870598 tagttactactttcctttgttccacacatatttgtttttcattggtgt 8870551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 49918522 - 49918694
Alignment:
Q  21 ttggtgtatttgtt--tctcttctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| ||||||  ||||||||||||||  ||||||||||||||| ||||  ||||||| ||||||| ||| ||||||| |||||  ||||||| |||    
T  49918522 ttggtgtgtttgttcctctcttctctccttttatcttttgcttgtggatttgtgcttttcattttgattcctagattagatataggtgctgttattgttg 49918621  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
     ||  ||||||||||  ||||||||||||||| ||||||||| ||||||||||||| | ||||  ||||||||    
T  49918622 attattgcttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgt 49918694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 3189503 - 3189604
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  ||||||||||||||||||||  ||||||||||||||||||| ||||||||||||| || |||||||||    
T  3189503 ttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggttttgtgcttttcactttgattactagattagatctaggtgttattattattg 3189602  T
Q  117 tt 118  Q
    ||    
T  3189603 tt 3189604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 3198320 - 3198421
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  ||||||||||||||||||||  ||||||||||||||||||| ||||||||||||| || |||||||||    
T  3198320 ttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggttttgtgcttttcactttgattactagattagatctaggtgttattattattg 3198419  T
Q  117 tt 118  Q
    ||    
T  3198420 tt 3198421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 3207159 - 3207260
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  ||||||||||||||||||||  ||||||||||||||||||| ||||||||||||| || |||||||||    
T  3207159 ttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggttttgtgcttttcactttgattactagattagatctaggtgttattattattg 3207258  T
Q  117 tt 118  Q
    ||    
T  3207259 tt 3207260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 210
Target Start/End: Original strand, 31659440 - 31659604
Alignment:
Q  47 ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgtttgctttgatattggt 144  Q
    ||||||||||||| ||||||||  ||||| ||||||||| ||| |||||||| |||| |||||||| |||  | |||||||||||   ||||||||||||    
T  31659440 ttatcttttgcttatggttttgtgctttttactttgattcctagattagatcaaggtgttgttattgttgattattgcttgtgttcattttgatattggt 31659539  T
Q  145 tattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    || |||||| || | ||||||||||| |  |||  |||||||| | |||||| |||||||||||||    
T  31659540 tactacttttcttttctccacacatcatattttatattggtgtga-ttttgagtccgaattcacaa 31659604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 37503553 - 37503364
Alignment:
Q  21 ttggtgtatttgtt--tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| ||||||  ||||||||||||  |||||||||||||| |||||||  ||||||||||| ||| ||| ||||||||||||| ||| |||| |||    
T  37503553 ttggtgtgtttgttcctctcttctctccctttatcttttgcttgcggttttgtgcttttcactttaattcctagattagatctaggtgttgatattgttg 37503454  T
Q  117 --ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
      | |||||||||||  ||||||||||      ||||||||| | ||||||||||| | ||||  |||||||| | |||||| |||||||||||||    
T  37503453 attattgcttgtgttcactttgatatt-----ctactttcctttactccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 37503364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 20762845 - 20763012
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  ||||||||||||||||||||  ||||||||||      ||| |||||||||||||  ||||||| |||    
T  20762845 ttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggttttgtgcttttcacttc-----ctagattagatctaggtgctgttattgttg 20762939  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
     ||  ||||||  ||  ||||||||||||||| ||||||||| ||||||||||||| | ||||  ||||||||    
T  20762940 attattgcttgaattcactttgatattggttaatactttcctttgctccacacatcatagtttgtattggtgt 20763012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 210
Target Start/End: Original strand, 44455362 - 44455526
Alignment:
Q  47 ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgtttgctttgatattggt 144  Q
    ||||||||||||| ||||||||   |||||||||||||| ||| |||||||||||||  ||||||| |||  | ||| |||||||  |||||||||||||    
T  44455362 ttatcttttgcttttggttttgtgtttttcactttgattcctagattagatctaggtgctgttattgttgattattgtttgtgttcactttgatattggt 44455461  T
Q  145 tattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||  ||||| || | ||||||| ||| | ||||  |||||||| | |||||| | |||||||||||    
T  44455462 taccacttttcttttctccacatatcatagtttgtattggtgtga-ttttgagtacgaattcacaa 44455526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 36683883 - 36683951
Alignment:
Q  117 ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggt 185  Q
    |||||||||| ||| |||||||||||||||  |||||||| |||||||||||| |||||||| ||||||    
T  36683883 ttttgcttgtttttactttgatattggttaccactttcctttgctccacacatgtttgtttttattggt 36683951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 169
Target Start/End: Complemental strand, 13316331 - 13316194
Alignment:
Q  35 tctcttctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgttt 130  Q
    ||||||||||||||  || ||||||||||||||| |   |||||||||||||| ||| |||||||||||||  ||||||| |||  | |||||||  ||     
T  13316331 tctcttctctccttttatattttgcttgtggttt-gtgtttttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgcattc 13316233  T
Q  131 gctttgatattggttattactttcctctgctccacacat 169  Q
     ||||| ||||| ||| ||||||||| ||||||||||||    
T  13316232 actttgttattgattactactttcctttgctccacacat 13316194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 5460076 - 5460126
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttg 68  Q
    |||||| ||| ||||||||| ||||||| ||||||||||||||||||||||    
T  5460076 ttcttgttgtgtttgtttctattctctctttatcttttgcttgtggttttg 5460126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 171
Target Start/End: Complemental strand, 44646777 - 44646654
Alignment:
Q  47 ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattatt-gttttgcttgtgtttgctttgatattggtt 145  Q
    |||||||||||||||| |||||  ||||||||||| ||| |||  |||||| ||||| |||||||| || || ||||||| | || | || |||||||||    
T  44646777 ttatcttttgcttgtgattttgtgcttttcacttt-atttctatgttagatttaggt-ttgttatttttggtgttgcttgaggtttcattaatattggtt 44646680  T
Q  146 attactttcctctgctccacacatct 171  Q
    | ||||||||| |||| |||||||||    
T  44646679 actactttcctttgctacacacatct 44646654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 24203002 - 24203038
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagtttt 194  Q
    |||||||||||||||||||||||||||||| ||||||    
T  24203002 tgctccacacatctttgttttcattggtgtgagtttt 24203038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 3460876 - 3460915
Alignment:
Q  29 tttgtttctcttctctccttatcttttgcttgtggttttg 68  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  3460876 tttgtttctcttctctctttatcttttgtttgtggttttg 3460915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 32889320 - 32889274
Alignment:
Q  139 attggttattactttcctctgctccacacatctttgttttcattggt 185  Q
    |||| |||| |||||| | ||||||||||||||||||||||||||||    
T  32889320 attgattatcactttcttttgctccacacatctttgttttcattggt 32889274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 36683850 - 36683892
Alignment:
Q  19 tcttggtgtatttgtttctcttctctccttatcttttgcttgt 61  Q
    ||||||||| ||||||| ||||||||| |||||||||||||||    
T  36683850 tcttggtgtgtttgtttgtcttctctctttatcttttgcttgt 36683892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 3189620 - 3189708
Alignment:
Q  119 ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcac 208  Q
    |||||||||||  |||||| |||||||| ||||||||| ||||||| ||||| | ||||  |||||||| | |||||  |||||||||||    
T  3189620 ttgcttgtgttcactttgaaattggttactactttcctttgctccagacatcatagtttatattggtgtga-ttttgtgtccgaattcac 3189708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 3198437 - 3198525
Alignment:
Q  119 ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcac 208  Q
    |||||||||||  |||||| |||||||| ||||||||| ||||||| ||||| | ||||  |||||||| | |||||  |||||||||||    
T  3198437 ttgcttgtgttcactttgaaattggttactactttcctttgctccagacatcatagtttatattggtgtga-ttttgtgtccgaattcac 3198525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 3207276 - 3207364
Alignment:
Q  119 ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcac 208  Q
    |||||||||||  |||||| |||||||| ||||||||| ||||||| ||||| | ||||  |||||||| | |||||  |||||||||||    
T  3207276 ttgcttgtgttcactttgaaattggttactactttcctttgctccagacatcatagtttatattggtgtga-ttttgtgtccgaattcac 3207364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 171
Target Start/End: Complemental strand, 44650135 - 44650012
Alignment:
Q  47 ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattatt-gttttgcttgtgtttgctttgatattggtt 145  Q
    |||||||||||||||| |||||  ||||||||||| ||| |||  |||||| ||||| |||||||| || || ||||||| | || | || |||||||||    
T  44650135 ttatcttttgcttgtgattttgtgcttttcacttt-atttctatgttagatttaggt-ttgttatttttggtgttgcttgaggtttcattaatattggtt 44650038  T
Q  146 attactttcctctgctccacacatct 171  Q
    | |||||| || |||| |||||||||    
T  44650037 actacttttctttgctacacacatct 44650012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 51765602 - 51765666
Alignment:
Q  47 ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttatt 112  Q
    ||||||| |||||||||||| |  |||||||||||| || ||| ||||||||||||| ||||||||    
T  51765602 ttatcttgtgcttgtggttt-gtgcttttcactttgtttcctagattagatctaggtgttgttatt 51765666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 16914168 - 16914124
Alignment:
Q  24 gtgtatttgtttctcttctctccttatcttttgcttgtggttttg 68  Q
    |||| ||||| ||||||||||| |||||||||||||| |||||||    
T  16914168 gtgtgtttgtgtctcttctctctttatcttttgcttgcggttttg 16914124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 19359080 - 19359116
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagtttt 194  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  19359080 tgctccacacatctttgtttacattggtgtgagtttt 19359116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 19361670 - 19361706
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagtttt 194  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  19361670 tgctccacacatctttgtttacattggtgtgagtttt 19361706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 19380310 - 19380346
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagtttt 194  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  19380310 tgctccacacatctttgtttacattggtgtgagtttt 19380346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 29651679 - 29651622
Alignment:
Q  152 ttcctctgctccacacatctttgtt-ttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||||| ||||||||||||||||||| ||||||||||| | |||||  |||||||||||||    
T  29651679 ttcctttgctccacacatctttgttattcattggtgtgatttttg--tccgaattcacaa 29651622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 46)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 36146404 - 36146214
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||| ||||||||||| | |||||||||||||| |    
T  36146404 ttggtgtgtttgtttctcttctctctttatcttttgcttgtggtttttagcttttcactttgattactagattagatctagatgttgttattattgttgt 36146305  T
Q  120 tgcttg-tgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||| ||||||||||||||||||||| ||||||||| ||||||||||||| | ||||  ||| |||||| |||||| |||||||||||||    
T  36146304 tgcttgttgtttgctttgatattggttactactttcctttgctccacacatcatagtttgtatttgtgtaa-ttttgagtccgaattcacaa 36146214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 41317430 - 41317240
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| |||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||| |    
T  41317430 ttggtgtgtttgtttctcctctctctttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattattgttgt 41317331  T
Q  120 tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||||||||||  ||||||||||||||| ||||||||| ||||||| ||||| | ||||  |||||||| || ||||| | |||||||||||    
T  41317330 tgcttgtgttcactttgatattggttactactttcctttgctccaaacatcatagtttgtattggtgtgagatttgagttcgaattcacaa 41317240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 47676132 - 47675938
Alignment:
Q  21 ttggtgtatttgtt--tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| ||||||  ||||||||||||  ||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||| ||||||||||||    
T  47676132 ttggtgtgtttgttcctctcttctctccatttatcttttgcttgtggttttgtgcttttcactttgattactagattagatctaggtgttgttattattg 47676033  T
Q  117 tt-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    || |||||||||||  ||||||||||||||| ||||||||| ||||||||||||| | ||||  |||||||| |||||||  |||||||||||||    
T  47676032 ttgttgcttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgtgtccgaattcacaa 47675938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 35 - 210
Target Start/End: Complemental strand, 14069813 - 14069635
Alignment:
Q  35 tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtgtttg 131  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||| || ||||||||||||     
T  14069813 tctcttctctccctttatcttgtgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattattattgttgcttgtgttta 14069714  T
Q  132 ctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||| ||| |||| ||||||||| ||||||||||||| | ||||  |||||||| |||||||| |||||||||||||    
T  14069713 ctttgaaattagttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaa 14069635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 35 - 210
Target Start/End: Complemental strand, 14379841 - 14379663
Alignment:
Q  35 tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtgtttg 131  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||| || ||||||||||||     
T  14379841 tctcttctctccctttatcttgtgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattattattgttgcttgtgttta 14379742  T
Q  132 ctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||| ||| |||| ||||||||| ||||||||||||| | ||||  |||||||| |||||||| |||||||||||||    
T  14379741 ctttgaaattagttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaa 14379663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 24525498 - 24525351
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||| |    
T  24525498 ttggtgtgtttgtttctcttctctctttatcttttgcttgtggttttgagcttttcactttgattactaaatttgatctaggtgttgttattattgttgt 24525399  T
Q  120 tgcttg-tgtttgctttgatattggttattactttcctctgctccaca 166  Q
    |||||| ||||||||||||||||| ||| |||||| || |||| ||||    
T  24525398 tgcttgttgtttgctttgatattgattactacttttctttgctacaca 24525351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 31105392 - 31105202
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatctttt-gcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    |||||||| | ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||| ||||||||| ||| |||||||| |||    
T  31105392 ttcttggtctgtttgtttctcttctctccttatctttttgcttgtggttttgagcttttcactttgattcctagattagatcttggtgttgttattgttg 31105293  T
Q  117 ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
      |||||||||||| ||||||||||| ||| ||||||||| | ||||||||||| | ||||| |||||||| |||||||  | |||||||||||    
T  31105292 --ttgcttgtgtttactttgatattgattactactttcctttactccacacatcatagtttt-attggtgtgagttttgtgttcgaattcacaa 31105202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 47673940 - 47673740
Alignment:
Q  21 ttggtgtatttgtt--tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| ||||||  ||||||||||||  |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||    
T  47673940 ttggtgtgtttgttcctctcttctctccctttatcttttgcttgtggttttgtacttttcactttgattactagattagatctaggtgttgttattattg 47673841  T
Q  117 tt-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaataaat 215  Q
    || ||| |||||||  ||||||||||||||| ||||||| | || |||||||||| | ||||  |||||||| |||||||  |||||||||| || ||||    
T  47673840 ttgttgtttgtgttcactttgatattggttactactttcttttgttccacacatcatagtttgtattggtgtgagttttgtgtccgaattcataacaaat 47673741  T
Q  216 t 216  Q
    |    
T  47673740 t 47673740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 38671218 - 38671027
Alignment:
Q  21 ttggtgtatttgtttctct--tctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgt- 117  Q
    ||||||| |||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||| |||| ||||||||     
T  38671218 ttggtgtgtttgtttctctcttctctccttatcttttgcttgtggttttgagcttttcactttgattactagatttgatctaggtgttgtcattattgtc 38671119  T
Q  118 tttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     |||||||||||  ||||||| || |||| || |||||| ||||||||||||| | ||||  |||||||| | |||||| |||||||||||||    
T  38671118 gttgcttgtgttcactttgatttttgttactattttcctttgctccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 38671027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 41649007 - 41648816
Alignment:
Q  21 ttggtgtatttgtttctct--tctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt 118  Q
    ||||||| |||||||||||  |||||| ||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||  || |||| |||||    
T  41649007 ttggtgtgtttgtttctctcttctctctttatcttttgcttgtggttttgagcttttcactttgattcctagattagatctaggtgctgctattgttgtt 41648908  T
Q  119 -ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     |||||||||||  |||||||||| |||| ||||||||| ||||||||||||| | ||||  |||||||| | |||||| |||||||||||||    
T  41648907 attgcttgtgttcactttgatattagttactactttcctttgctccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 41648816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 19502351 - 19502545
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||  |||| || |||||||||||||||  |||||||||||||||||| ||||||||||||| ||||||||||||    
T  19502351 ttggtgtgtttgtttctctcttctctccctttattttgtgcttgtggttttgagtttttcactttgattactagattagatctaggtgttgttattattg 19502450  T
Q  117 tt-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    || |||||||| ||| |||||| |||||||| ||||||||| ||||||||||||| | ||||  ||| |||| |||||||| || ||||||||||    
T  19502451 ttgttgcttgtatttactttgaaattggttactactttcctttgctccacacatcatagtttgtattagtgtgagttttgagtctgaattcacaa 19502545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 1113829 - 1114019
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||||||||||| | ||||||||||||||||||||||   |||||| ||||||| ||| ||||||||||||| || ||||| ||||| |    
T  1113829 ttggtgtgtttgtttctcttctccctttatcttttgcttgtggttttgtgtttttcattttgattcctagattagatctaggtgttattattgttgttat 1113928  T
Q  120 tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||||||||||| |||||||||| ||||  |||||||| ||||||||||||| | ||||  |||| ||| |||||||| || ||||||||||    
T  1113929 tgcttgtgtttactttgatattagttaccactttcctttgctccacacatcatagtttgtattgatgtgagttttgattcggaattcacaa 1114019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 8153514 - 8153664
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||| || || |||||||||| |||||||||||||| |    
T  8153514 ttggtgtgtttatttctcttctctctttatcttttgcttgtggttttgagcttttcactttgattattagatcagatctaggtgttgttattattgttgt 8153613  T
Q  120 tgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
    |||||||| |  ||||||||||| ||| ||||||||| |||||||| ||||    
T  8153614 tgcttgtgctcactttgatattgattactactttcctttgctccacgcatc 8153664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 47 - 210
Target Start/End: Original strand, 18126848 - 18127013
Alignment:
Q  47 ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgtttgctttgatattggt 144  Q
    ||||||||||||||||||||||  ||||||||||||||| ||| ||||||||||||| |||||||| |||  | |||||||||||  ||||||||||| |    
T  18126848 ttatcttttgcttgtggttttgtgcttttcactttgattcctagattagatctaggtgttgttattcttgattattgcttgtgttcactttgatattgat 18126947  T
Q  145 tattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    || ||||||||| | ||||||||||| | ||||  |||||||| |||||||| |||||||||||||    
T  18126948 tactactttcctttactccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaa 18127013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 210
Target Start/End: Original strand, 4586349 - 4586528
Alignment:
Q  35 tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattatt--gttttgcttgtgttt 130  Q
    ||||||||||||  |||||||||| |||||||||||  ||||||||||||||||||| ||||||||||||| |||||||| ||   | |||||||||||     
T  4586349 tctcttctctccctttatcttttgtttgtggttttgtgcttttcactttgattactagattagatctaggtgttgttattgtttattattgcttgtgttc 4586448  T
Q  131 gctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     |||||| ||||||||  |||||||| ||||||||||||| | |||| ||||||||| || ||||| |||||||||||||    
T  4586449 actttgaaattggttaccactttcctttgctccacacatcatagtttacattggtgtgagatttgagtccgaattcacaa 4586528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 210
Target Start/End: Original strand, 23555229 - 23555408
Alignment:
Q  35 tctcttctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgttt--tgcttgtgttt 130  Q
    ||||||||||||||  |||||||||||||||| |||   |||| ||||||||| ||| ||||||||||||| |||||||| ||| ||  ||||||||||     
T  23555229 tctcttctctccttttatcttttgcttgtggtattgtgttttttactttgattcctagattagatctaggtgttgttattgttgattattgcttgtgttc 23555328  T
Q  131 gctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     ||||||||||||||| ||||||||| ||||||||||||| | ||||  |||||||| |||||||| |||||||||||||    
T  23555329 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaa 23555408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 26417485 - 26417683
Alignment:
Q  18 ttcttggtgtatttgtt--tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttatta 113  Q
    |||||||||| ||||||  ||||||||||||  ||||||||||||||||||||||| |||||||||||||||  || |||| ||||||||  |||||||     
T  26417485 ttcttggtgtgtttgttcctctcttctctccctttatcttttgcttgtggttttgagcttttcactttgattcatagattatatctaggtgctgttattg 26417584  T
Q  114 ttgttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||| ||  |||||||| || ||||||||||||||| ||||||||| | ||||||| ||| | ||||  |||||||| |||||||| |||||||||||||    
T  26417585 ttgattattgcttgtggttactttgatattggttactactttcctttactccacatatcatagtttgtattggtgtgagttttgagtccgaattcacaa 26417683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 495979 - 495833
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||||| ||||||| |||||| ||||||||| ||||  | |||||||||||||| ||| ||||||||||||| |||||||| ||||| |    
T  495979 ttggtgtgtttgtttcttttctctctttatctcttgcttgtgattttctatttttcactttgattcctagattagatctaggtgttgttattgttgttat 495880  T
Q  120 tgcttgtgtttgctttgatattggttattactttcctctgctccaca 166  Q
    || |||||||| ||||||||||||||| ||||||||| |||||||||    
T  495879 tgtttgtgtttactttgatattggttactactttcctttgctccaca 495833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 35 - 208
Target Start/End: Original strand, 43864432 - 43864609
Alignment:
Q  35 tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgttt 130  Q
    ||||||||||||  ||||||||||||||||||||||  ||||||||||||||| ||| |||||||||||||  ||||||| |||  | |||||||||||     
T  43864432 tctcttctctccctttatcttttgcttgtggttttgtgcttttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttc 43864531  T
Q  131 gctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcac 208  Q
     ||||||||||| |||  |||||||| | ||||||||||| | ||||  |||||||| |||||||| |||||||||||    
T  43864532 actttgatattgattaccactttcctttactccacacatcatagtttgtattggtgtgagttttgagtccgaattcac 43864609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 210
Target Start/End: Complemental strand, 31732949 - 31732770
Alignment:
Q  35 tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgttt 130  Q
    ||||||||||||  ||||||||||||||||||||||  ||||||||||||||||||| ||||||||||    |||||||| |||  | |||||||||||     
T  31732949 tctcttctctccctttatcttttgcttgtggttttgtgcttttcactttgattactagattagatctaaaggttgttattgttgattattgcttgtgttc 31732850  T
Q  131 gctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     |||||| |||||||| ||||||| | ||||||||||||| | ||||  | |||||| |||||||| |||||||||||||    
T  31732849 actttgaaattggttactactttcatttgctccacacatcatagtttgtactggtgtgagttttgagtccgaattcacaa 31732770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 55 - 156
Target Start/End: Complemental strand, 30024714 - 30024612
Alignment:
Q  55 tgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtgtttgctttgatattggttattacttt 153  Q
    ||||||||||||||  ||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| |||||| |||||||| ||||||    
T  30024714 tgcttgtggttttgtgcttttcactttgattactagattagatctaggtgttgttattattgttgttgcttgtgtttactttgaaattggttactacttt 30024615  T
Q  154 cct 156  Q
    |||    
T  30024614 cct 30024612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 47 - 210
Target Start/End: Original strand, 48489633 - 48489797
Alignment:
Q  47 ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgtttgctttgatattggt 144  Q
    ||||||||||||||||||||||  ||||||||||||||| ||| ||||||||||||| |||||||| |||  | |||||  ||||  |||||||||||||    
T  48489633 ttatcttttgcttgtggttttgtgcttttcactttgattcctagattagatctaggtgttgttattgttgattattgctcatgttcactttgatattggt 48489732  T
Q  145 tattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    || ||||||||| ||||||||||||| | |||   |||||||| | |||||| |||||||||||||    
T  48489733 tactactttcctttgctccacacatcatagttggtattggtgtga-ttttgagtccgaattcacaa 48489797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 23565061 - 23564903
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtgg-ttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    |||||||||| ||||||||||||||||  ||||||||||||||||| |||||   |||||||||||||| ||| ||||||||||||| |||||||| |||    
T  23565061 ttcttggtgtgtttgtttctcttctctatttatcttttgcttgtggtttttgtgattttcactttgatttctagattagatctaggttttgttattgttg 23564962  T
Q  117 ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttt 177  Q
      ||||||||| || ||||||||||||| | |||||| ||   |||||||||||| |||||    
T  23564961 --ttgcttgtggttactttgatattggtcactacttttcttcactccacacatctatgttt 23564903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 37 - 187
Target Start/End: Original strand, 25616047 - 25616199
Alignment:
Q  37 tcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgtttgctt 134  Q
    ||||||||| ||||||| ||||||||||||||  |||||||||| |||| ||| ||||||||||||| |||||||| |||  | |||||||||||  |||    
T  25616047 tcttctctctttatcttgtgcttgtggttttgtgcttttcacttcgattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactt 25616146  T
Q  135 tgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
    |||||||||||| ||||||||| ||||||| ||||| | ||||  ||||||||    
T  25616147 tgatattggttactactttcctttgctccatacatcatagtttgtattggtgt 25616199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 48491758 - 48491942
Alignment:
Q  29 tttgtttctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgctt 124  Q
    |||||| |||||||||||  ||||||||||||||||||||||  ||||||| ||||||| ||| ||||||||||||  |||||||| |||  | ||||||    
T  48491758 tttgttcctcttctctccctttatcttttgcttgtggttttgtgcttttcattttgattcctatattagatctaggcgttgttattgttgattattgctt 48491857  T
Q  125 gtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||  ||||||||||||||| ||||||||| | |||| |||||  | |||   |||||||| | ||||||||||||||||||||    
T  48491858 gtgttcactttgatattggttactactttcctttactccgcacattatagttggtattggtgtga-ttttgaatccgaattcacaa 48491942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 23344142 - 23344292
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgt 117  Q
    |||||||||| | ||||||||||||||| |||||| || |||| |||||||   ||||||||||||||  || |||| |||||||| |||||||| |||     
T  23344142 ttcttggtgtgtatgtttctcttctctctttatctctttcttgcggttttgtgtttttcactttgattcgtagattaaatctaggttttgttattgttg- 23344240  T
Q  118 tttgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
     ||||||||| || ||| ||||||||||| ||||||||| |||||||||||||    
T  23344241 -ttgcttgtggttacttggatattggttactactttcctttgctccacacatc 23344292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 4253527 - 4253375
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgt 117  Q
    |||||||||| ||||||||||||| ||| ||||| |||||||||| ||||| ||||||| | |||||| ||| ||||||||||||| || ||||||||||    
T  4253527 ttcttggtgtgtttgtttctcttcactctttatcgtttgcttgtgcttttgtacttttcgc-ttgatttctatattagatctaggt-tttttattattgt 4253430  T
Q  118 t-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatct 171  Q
    | |||| || | || ||||||||||||||| ||||||| | |||| |||||||||    
T  4253429 tgttgcctgaggttactttgatattggttaatactttcttttgctacacacatct 4253375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 12097863 - 12097789
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattag 95  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  12097863 ttggtgtgtttgtttctcttctctctttatcttttgcttgtggttttgagcttttcactttgattactagattag 12097789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 31519072 - 31519256
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgt 117  Q
    |||||||||| |||||||||||||| || ||||||||||||||||        ||||||||||||||| ||| ||||||||||||| |||||||||||||    
T  31519072 ttcttggtgtgtttgtttctcttctttctttatcttttgcttgtg--------cttttcactttgattcctagattagatctaggtgttgttattattgt 31519163  T
Q  118 t-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |  ||||| || || | ||||||||  ||| || |||  | ||||||||||||| || |||||||||| || |||||||| ||| |||||||||    
T  31519164 tgctgcttatgattacattgatattaattactatttttatttgctccacacatc-ttattttcattggcgtgagttttgagtccaaattcacaa 31519256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 47 - 170
Target Start/End: Original strand, 27348019 - 27348144
Alignment:
Q  47 ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgtttgctttgatattggt 144  Q
    ||||||||||||||||||||||   |||||||||||||| ||| |||||||||||||  ||||||| |||  | ||| |||||||  |||||||||||||    
T  27348019 ttatcttttgcttgtggttttgtgtttttcactttgattcctagattagatctaggtgctgttattgttgattattgtttgtgttcactttgatattggt 27348118  T
Q  145 tattactttcctctgctccacacatc 170  Q
    |  ||||||||| |||||||||||||    
T  27348119 tgctactttcctttgctccacacatc 27348144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 29991226 - 29991397
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  |||||||||||||||||| |  |||||| |||||||| ||| ||||||||||||| |||||||| |||    
T  29991226 ttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggttt-gtgcttttctctttgattcctatattagatctaggtgttgttattgttg 29991324  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
     ||  | |||||| |  ||||||||||||||| |||||| || ||||||||||||| | ||||  ||||||||    
T  29991325 attattacttgtgctcactttgatattggttactacttttctttgctccacacatcatagtttgtattggtgt 29991397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 35854086 - 35854243
Alignment:
Q  19 tcttggtgtatttgtttctct--tctctcc---ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttatta 113  Q
    ||||||||| |||||||||||  |||||||   ||||||| |||||||| ||||   |||||||||||| || ||| |||||||||||||  |||||||     
T  35854086 tcttggtgtgtttgtttctctcttctctcccttttatcttgtgcttgtg-ttttatgcttttcactttgcttcctagattagatctaggtgctgttattg 35854184  T
Q  114 ttgttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
    ||| ||  || |||||||  ||||||||||||||| ||||||||| |||||||||||||    
T  35854185 ttgattattgtttgtgttcactttgatattggttactactttcctttgctccacacatc 35854243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 36574515 - 36574363
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgt 117  Q
    |||||| ||| ||||||| ||||||||| ||||||||| ||||||||||||   ||||||| |||||| ||| |||||||||| || |||||||| ||||    
T  36574515 ttcttgatgtgtttgtttttcttctctctttatctttttcttgtggttttgtgtttttcac-ttgattcctagattagatctaagt-ttgttattgttgt 36574418  T
Q  118 t-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatct 171  Q
    | | || || | || ||||||||||||||| || |||||| || |||||||||||    
T  36574417 tgtggcctgagattactttgatattggttaatattttcctttgatccacacatct 36574363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 4178946 - 4179117
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  || ||||||||||||||| |   |||||||||||||| ||| |||||||||||||  ||||||| |||    
T  4178946 ttggtgtgtttgtttctctcttctctccttttatattttgcttgtggttt-gtgtttttcactttgattcctagattagatctaggtgctgttattgttg 4179044  T
Q  117 --ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
      | ||||||   ||  ||||| ||||||||| ||||||||| ||||||||||||| | ||||  ||||||||    
T  4179045 attattgcttacattcactttgttattggttactactttcctttgctccacacatcatagtttgtattggtgt 4179117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 18408628 - 18408578
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||||||||||||||||| ||||||||| ||||||  ||||||||||||||    
T  18408628 tgctccacacatctttgtttacattggtgtgagtttt--atccgaattcacaa 18408578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 1533678 - 1533714
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagtttt 194  Q
    |||||||||||||||||||||||||||||| ||||||    
T  1533678 tgctccacacatctttgttttcattggtgtgagtttt 1533714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 12097084 - 12097020
Alignment:
Q  93 tagatctaggtattgttattattgtt-ttgcttgtgtttgctttgatattggttattactttcct 156  Q
    ||||||||||| ||||| |||||||| ||| |||||||  ||||||||||||||| |||||||||    
T  12097084 tagatctaggtgttgttgttattgttgttgattgtgttcactttgatattggttactactttcct 12097020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 171
Target Start/End: Original strand, 40808760 - 40808910
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||||| |||||||  |||||||||||||||||||||   ||| ||| |||  | ||| |||| | ||||||  ||||||||||||| |    
T  40808760 ttggtgtgtttgtttcttttctctctatatcttttgcttgtggttttgtgttttacac-ttgggtcctagattaaacctaggt-ctgttattattgttgt 40808857  T
Q  120 tgcttgtgtttgctttgatattggttattactttcc-tctgctccacacatct 171  Q
    |||||| |  | |||||||||| |||| |||||||| | ||||||||||||||    
T  40808858 tgcttgagaatactttgatatttgttactactttccttttgctccacacatct 40808910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 193
Target Start/End: Original strand, 20357785 - 20357820
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagttt 193  Q
    |||||||||||||||||||||||||||||| |||||    
T  20357785 tgctccacacatctttgttttcattggtgtgagttt 20357820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 26639494 - 26639544
Alignment:
Q  17 attcttggtgtatttgtttctcttctctccttatcttttgcttgtggtttt 67  Q
    ||||||||||  |||||||||||| |||| ||| |||||||||||||||||    
T  26639494 attcttggtgcgtttgtttctcttatctctttaccttttgcttgtggtttt 26639544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 187
Target Start/End: Complemental strand, 3047114 - 3047085
Alignment:
Q  158 tgctccacacatctttgttttcattggtgt 187  Q
    ||||||||||||||||||||||||||||||    
T  3047114 tgctccacacatctttgttttcattggtgt 3047085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 18413505 - 18413455
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||| ||||||||||||| ||||||||| ||||||  ||||||||||||||    
T  18413505 tgctcctcacatctttgtttacattggtgtgagtttt--atccgaattcacaa 18413455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 170
Target Start/End: Complemental strand, 25766898 - 25766798
Alignment:
Q  72 ttttcactttgattactaaattagatctaggtattgttattattgttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacat 169  Q
    |||||||||||||  ||| |||||||||||||  ||||||| ||| ||  |||||| | |  ||||| ||||||||| |||||| || ||||||||||||    
T  25766898 ttttcactttgatacctagattagatctaggtgctgttattgttgattattgcttgcgctcactttgttattggttactacttttctttgctccacacat 25766799  T
Q  170 c 170  Q
    |    
T  25766798 c 25766798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 39731574 - 39731638
Alignment:
Q  47 ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttatt 112  Q
    ||||||| |||||||||||| |  |||||||||||| || ||| ||||||||||||| ||||||||    
T  39731574 ttatcttgtgcttgtggttt-gtgcttttcactttgtttcctagattagatctaggtgttgttatt 39731638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 6430442 - 6430494
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||||||||||||| | ||||  |||||||| |||||||| |||||||||||||    
T  6430442 tgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaa 6430494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 21645870 - 21645834
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagtttt 194  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  21645870 tgctccacacatctttgtttacattggtgtgagtttt 21645834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 33162446 - 33162256
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||| |    
T  33162446 ttggtgtgtttgtttctcttctctatttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattattgttgt 33162347  T
Q  120 tgcttg-tgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||| ||||||||||||||||||||| ||||||||| ||||||||||||| | ||||  |||| ||| | |||||| |||||||||||||    
T  33162346 tgcttgttgtttgctttgatattggttactactttcctttgctccacacatcatagtttgtattgatgtga-ttttgagtccgaattcacaa 33162256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 34139766 - 34139569
Alignment:
Q  21 ttggtgtatttgtttctct--tctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt 118  Q
    ||||||| |||||||||||  |||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  34139766 ttggtgtgtttgtttctctcttctctctttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtcttgttattattgtt 34139667  T
Q  119 -ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaataaatt 216  Q
     |||||||||||  ||||||||||||||| ||||||||| ||||||||||||| | ||||  |||||||| | |||||| ||||||||||||| |||||    
T  34139666 gttgcttgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaacaaatt 34139569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 11067477 - 11067627
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||| |    
T  11067477 ttggtgtgtttgtttctcttctctctttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattattgttgt 11067576  T
Q  120 tgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
    ||||||||||  ||||||||||||||| ||||||||| |||||||||||||    
T  11067577 tgcttgtgttcactttgatattggttactactttcctttgctccacacatc 11067627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 22 - 210
Target Start/End: Original strand, 39285012 - 39285200
Alignment:
Q  22 tggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-tt 120  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||| ||    
T  39285012 tggtgtgtttgtttctcttctctctttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattattgttgtt 39285111  T
Q  121 gcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||||||| |||||| |||||||| |||||| || ||||||||||||| | ||| | |||||| | |||||| | |||||||||||||    
T  39285112 gcttgtgtttactttgaaattggttactacttttctttgctccacacatcatagttgt-attggtatgagttttaagtccgaattcacaa 39285200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 723740 - 723549
Alignment:
Q  21 ttggtgtatttgtttctct--tctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt 118  Q
    ||||||| |||||||||||  |||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  723740 ttggtgtgtttgtttctctcttctctctttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattattgtt 723641  T
Q  119 -ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     ||| |||||||  ||||||||||||||| ||||||||| ||||||||||||| | ||||  |||||||| | |||||| |||||||||||||    
T  723640 gttgattgtgttcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 723549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 11151587 - 11151397
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||| ||||||||||| | |||||||||||||| |    
T  11151587 ttggtgtgtttgtttctcttctctctttatcttttgtttgtggttttgagcttttcactttgattactagattagatctagctgttgttattattgttgt 11151488  T
Q  120 tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||||||||||  ||||||||||| ||| ||||||  | ||||||||||||| | ||||  |||||| | |||||||| | |||||||||||    
T  11151487 tgcttgtgttcactttgatattgattactacttttatttgctccacacatcatagtttgtattggtatgagttttgagttcgaattcacaa 11151397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 42362520 - 42362711
Alignment:
Q  21 ttggtgtatttgtttctc--ttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt 118  Q
    ||||||| ||||||||||  ||||||| |||||||||||||||||||||||  |||||||||||||||||| ||||||||||||| ||||||||||||||    
T  42362520 ttggtgtgtttgtttctctcttctctctttatcttttgcttgtggttttgagtttttcactttgattactagattagatctaggtgttgttattattgtt 42362619  T
Q  119 -ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     ||||||| |||  ||||||| ||||||| ||||||||| ||||||||||||| | ||||  |||||||| | |||||| |||||||||||||    
T  42362620 gttgcttgagttcactttgattttggttactactttcctttgctccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 42362711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 36773734 - 36773924
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| |||||||||||||| || ||||||||||||||||||||||| ||||||  ||| ||||||| ||||||||||||| |||||||||||||| |    
T  36773734 ttggtgtgtttgtttctcttctttctttatcttttgcttgtggttttgagcttttcttttttattactagattagatctaggtgttgttattattgttgt 36773833  T
Q  120 tgctt-gtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||  |||| |||||||||||||||| ||||||| | ||||||||||||| | ||||  |||||||| | ||||||||||||||||||||    
T  36773834 tgcttcttgttggctttgatattggttactactttcatttgctccacacatcatagtttgtattggtgtga-ttttgaatccgaattcacaa 36773924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 14633821 - 14633652
Alignment:
Q  21 ttggtgtatttgtttctct--tctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt 118  Q
    ||||||| |||||||||||  |||||| |||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  14633821 ttggtgtgtttgtttctctattctctctttatcttttgattgtggttttgagcttttcactttgattactagattagatctaggtgttgttattattgtt 14633722  T
Q  119 -ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
     |||||||||||  ||||||||||||||| ||||||||| |||| |||||||| | ||||  ||||||||    
T  14633721 gttgcttgtgttcactttgatattggttactactttcctttgcttcacacatcatagtttgtattggtgt 14633652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 36318005 - 36317815
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg-ttt 119  Q
    ||||||| ||||||| |||||| || ||||||||||||||||||||||  ||||||||||||||||||| |||| |||||||| |||||||||||| | |    
T  36318005 ttggtgtgtttgtttatcttctttctttatcttttgcttgtggttttgtgcttttcactttgattactagattaaatctaggtgttgttattattgctgt 36317906  T
Q  120 tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||||||||||| |||||| |||||||| ||||||| | || || ||||||| ||||||  |||||||| |||||||| ||| |||||||||    
T  36317905 tgcttgtgtttactttgaaattggttactactttcatttgttctacacatcattgtttgtattggtgtgagttttgagtccaaattcacaa 36317815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 24885770 - 24885951
Alignment:
Q  29 tttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtg 127  Q
    ||||||||||||||| | ||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||| ||||||| |||||| || ||||||    
T  24885770 tttgtttctcttctccctttatcttttgcttgtggttttgtgcttttcactttgattactagattagatctaggtgttgttatcattgttgtttcttgtg 24885869  T
Q  128 tttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||  ||||||||||||||| || |||||| |||| |||||||| | ||||  |||||||| | |||||| |||||||||||||    
T  24885870 ttcactttgatattggttactattttcctttgctacacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 24885951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 2334413 - 2334220
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||  ||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| ||||||||||||    
T  2334413 ttggtgtgtttgtttctctcttctctccctttatcttgtgcttgtggttttgaagttttcactttgattaccagattagatctaggtgttgttattattg 2334314  T
Q  117 tt-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    || |||||||||||| |||||| |||||||| ||||||||| |||| |||||||| | ||||  |||||||| | |||||| || ||||||||||    
T  2334313 ttgttgcttgtgtttactttgaaattggttactactttcctttgcttcacacatcatagtttgtattggtgtga-ttttgagtctgaattcacaa 2334220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 36988071 - 36987877
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  ||||||||||||||| ||||  ||||||||||||||| ||| ||||||||||||| |||||||| |||    
T  36988071 ttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggctttgtgcttttcactttgattcctagattagatctaggtgttgttattgttg 36987972  T
Q  117 --ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
      | |||||||||||| |||||| |||||||| ||||||||| ||||||||||||| | ||||  |||||||| | |||||| |||||||||||||    
T  36987971 attattgcttgtgtttactttgaaattggttactactttcctttgctccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 36987877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 14202417 - 14202269
Alignment:
Q  21 ttggtgtatttgttt--ctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt 118  Q
    ||||||| |||||||  |||||||||| ||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  14202417 ttggtgtgtttgtttatctcttctctctttatcttttgcttgtggttttaagcttttcactttgattactagattagatctaggtgttgttattattgtt 14202318  T
Q  119 -ttgcttgtgtttgctttgatattggttattactttcctctgctccaca 166  Q
     ||||||| |||  ||||||||||| ||| ||||||||| | |||||||    
T  14202317 gttgcttgcgttcactttgatattgattactactttcctttactccaca 14202269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 31 - 170
Target Start/End: Original strand, 2838132 - 2838272
Alignment:
Q  31 tgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtgtt 129  Q
    ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| ||| |||| |||||||| |||||||| ||||| ||| |||||||    
T  2838132 tgtttctcttctcactttatcttttgcttgtggttttgagcttttcactttgattcctagattatatctaggtgttgttattgttgttgttgtttgtgtt 2838231  T
Q  130 tgctttgatattggttattactttcctctgctccacacatc 170  Q
    | |||||||| |||||| ||||||||| | |||||||||||    
T  2838232 tactttgatagtggttactactttcctttactccacacatc 2838272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 210
Target Start/End: Original strand, 29868057 - 29868235
Alignment:
Q  35 tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtgtttg 131  Q
    ||||||||||||  ||||||| |||||||||||||||  |||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||     
T  29868057 tctcttctctccgtttatcttgtgcttgtggttttgagtttttcactttgattactagattagatctaggtgttgttattattgttgttgcttgtgttta 29868156  T
Q  132 ctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||| | |||| ||| |||||| || ||||||||||||| | ||||  |||| ||| |  ||||| |||||||||||||    
T  29868157 ctttaaaattgattactacttttctttgctccacacatcatagtttgtattgctgtgaaatttgagtccgaattcacaa 29868235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 204
Target Start/End: Original strand, 38312428 - 38312600
Alignment:
Q  35 tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgttt 130  Q
    ||||||||||||  ||||||||||||||||||||||  ||||||||||||||| ||| |||||||||||||  ||||||| |||  | |||||||||||     
T  38312428 tctcttctctccctttatcttttgcttgtggttttgtgcttttcactttgattcctagattagatctaggtgctgttattgttgattgttgcttgtgttc 38312527  T
Q  131 gctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaat 204  Q
     ||||||||||||||| ||||||||| ||||||||||||| ||||||  |||||||| | |||||| |||||||    
T  38312528 actttgatattggttactactttcctttgctccacacatcattgtttatattggtgtga-ttttgagtccgaat 38312600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 11049723 - 11049888
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgt 117  Q
    ||||| |||| ||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| ||| |||||||||||||    ||||||||||    
T  11049723 ttctttgtgtgtttgtttctcttctctctttatattttgcttgtggttttgtacttttcactttgattcctagattagatctaggt----ttattattgt 11049818  T
Q  118 t-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
    | |||||| || || ||||||||||||||| ||||||| | |||||||| |||| | ||||| ||||||||    
T  11049819 tgttgcttatgattactttgatattggttactactttcttttgctccacgcatcatagtttt-attggtgt 11049888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 11690682 - 11690854
Alignment:
Q  29 tttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgttttgcttgtgt 128  Q
    ||||||||||||||| | ||||||||||||||||||||||| ||||||||||| ||| ||| ||||||||||||| ||||||        ||||||||||    
T  11690682 tttgtttctcttctccctttatcttttgcttgtggttttgagcttttcactttaattcctagattagatctaggtgttgtta--------ttgcttgtgt 11690773  T
Q  129 ttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |  | |||||||| |||| ||||||||| ||||||||||||| | ||||  |||||||| |||||||| |||||||||||||    
T  11690774 tcac-ttgatattagttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaa 11690854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 6595001 - 6594806
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcc---ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattatt 115  Q
    ||||||| |||||||||||  |||||||   ||||||||||||||||||||||  ||||||||||||||| ||| |||||||||||||  ||||||| ||    
T  6595001 ttggtgtgtttgtttctctcttctctcccttttatcttttgcttgtggttttgtgcttttcactttgatttctagattagatctaggtgctgttattgtt 6594902  T
Q  116 g--ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |  | || ||||||||  ||||||||||||||| |||||| || ||||||||||||| | ||||  |||||||| | |||||| ||| |||||||||    
T  6594901 gattattacttgtgttcactttgatattggttactactttactttgctccacacatcatagtttgtattggtgtga-ttttgagtccaaattcacaa 6594806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 17057335 - 17057171
Alignment:
Q  47 ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgtttgctttgatattggt 144  Q
    ||||||||||||||||||||||  ||||||||||| ||| ||| |||||||||||||  ||||||| |||  | |||||||||||  |||||||||||||    
T  17057335 ttatcttttgcttgtggttttgtgcttttcactttaattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggt 17057236  T
Q  145 tattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    || ||||||||| ||||| ||||||| |  |||  |||||||| | |||||| |||||||||||||    
T  17057235 tactactttcctttgctctacacatcatattttgtattggtgtga-ttttgagtccgaattcacaa 17057171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 17085318 - 17085154
Alignment:
Q  47 ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgtttgctttgatattggt 144  Q
    ||||||||||||||||||||||  ||||||||||| ||| ||| |||||||||||||  ||||||| |||  | |||||||||||  |||||||||||||    
T  17085318 ttatcttttgcttgtggttttgtgcttttcactttaattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggt 17085219  T
Q  145 tattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    || ||||||||| ||||| ||||||| |  |||  |||||||| | |||||| |||||||||||||    
T  17085218 tactactttcctttgctctacacatcatattttgtattggtgtga-ttttgagtccgaattcacaa 17085154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 12123584 - 12123434
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgt 117  Q
    ||||||| || |||||||||||| |||| |||||||||||||||| ||||| | ||||||| |||||| ||| ||||||| ||||| |||||||| ||||    
T  12123584 ttcttggcgtgtttgtttctcttatctctttatcttttgcttgtgattttgtatttttcac-ttgatttctagattagatataggt-ttgttattgttgt 12123487  T
Q  118 t-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacat 169  Q
    | ||| ||| | || ||||||||||||||| ||||||||| ||||||||||||    
T  12123486 tgttgtttgaggttactttgatattggttactactttcctttgctccacacat 12123434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 1345636 - 1345730
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttatt 112  Q
    |||||||||| ||||||||||||||| | ||||||| || |||||||||||| ||||||||||||||| ||| ||||||||||||| ||||||||    
T  1345636 ttcttggtgtgtttgtttctcttctcactttatcttatgattgtggttttgagcttttcactttgattcctagattagatctaggtgttgttatt 1345730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 45099927 - 45100081
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  || ||||||||||| ||| |  ||||||||||||||| ||| |||||||||||||  ||||||| |||    
T  45099927 ttggtgtgtttgtttctctcttctctccttttatattttgcttgtgattt-gtgcttttcactttgattcctagattagatctaggtgctgttattgttg 45100025  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
     ||  ||||||||||  ||||||||||||||| ||||||||| |||||||||||||    
T  45100026 attattgcttgtgttcactttgatattggttactactttcctttgctccacacatc 45100081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 26353358 - 26353495
Alignment:
Q  24 gtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgttttgct 123  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||   ||||||||||||||     |||||||||| || |||||||| |||  || ||    
T  26353358 gtgtgtttgtttctctcctctccttatcttttgcttgtggttttgtgtttttcactttgatt-----attagatctaagttttgttattgttg--ttcct 26353450  T
Q  124 tgtgtttgctttgatattggttattactttcctctgctccacaca 168  Q
    |||| || |||| |||||||||| ||||||||| ||||| |||||    
T  26353451 tgtgattactttaatattggttactactttcctttgctctacaca 26353495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 36205660 - 36205506
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttt-tgaacttttcactttgattactaaattagatctaggtattgttattatt 115  Q
    ||||||| |||||||||||  |||||||||  || ||||||||||||||| ||  ||||||||||||||| ||| |||||||||||||  ||||||| ||    
T  36205660 ttggtgtgtttgtttctctcttctctccttttatattttgcttgtggtttctg--cttttcactttgattcctagattagatctaggtgctgttattgtt 36205563  T
Q  116 gttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
    | ||  ||||||||||  ||||| ||||||||| ||||||||| |||||||||||||    
T  36205562 gattattgcttgtgttcactttgttattggttactactttcctttgctccacacatc 36205506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 5723251 - 5723080
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  |||||||||||||||||| |  ||||||  ||||||| ||| ||||||||||||| |||||||| |||    
T  5723251 ttggtgtgtttgtttctctattctctccttttatcttttgcttgtggttt-gtgcttttctttttgattcctagattagatctaggtgttgttattgttg 5723153  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
     ||  || ||||| |  ||||||||||||||| |||||| || ||||||||||||| | ||||  ||||||||    
T  5723152 attattgtttgtgctcactttgatattggttactactttactttgctccacacatcatagtttgtattggtgt 5723080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 13121946 - 13122124
Alignment:
Q  29 tttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtg 127  Q
    ||||||||||||||||| |||||||||||||||||||||    ||||||| |||||| ||| |||| |||||||| |||||||| |||||  ||||||      
T  13121946 tttgtttctcttctctctttatcttttgcttgtggttttatgtttttcac-ttgatttctagattacatctaggt-ttgttattgttgttactgcttgat 13122043  T
Q  128 tttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
     ||  |||||||||| ||| |||||| || | ||||||||||| | ||||| |||||||| | |||||  |||||||||||||    
T  13122044 gttattttgatattgattagtacttttctttactccacacatcatagtttt-attggtgtga-ttttgtgtccgaattcacaa 13122124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 170
Target Start/End: Complemental strand, 4484293 - 4484169
Alignment:
Q  47 ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgtttgctttgatattggt 144  Q
    ||||||| |||||||||||||   |||||||||||| || ||| ||||||||||||| |||||||| |||  | |||||||   |  ||||| |||||||    
T  4484293 ttatcttgtgcttgtggtttttg-cttttcactttgtttcctagattagatctaggtgttgttattgttgattattgcttgcactcactttgttattggt 4484195  T
Q  145 tattactttcctctgctccacacatc 170  Q
    || ||||||||| |||||||||||||    
T  4484194 tactactttcctttgctccacacatc 4484169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 4503128 - 4502975
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  ||||| |||||||| |||||  |||||||||||| || ||| |||||||||||||  ||||||| |||    
T  4503128 ttggtgtgtttgtttctctcttctctccttttatcttgtgcttgtg-ttttgtgcttttcactttgtttcctagattagatctaggtgctgttattgttg 4503030  T
Q  117 --ttttgcttgtgtttgctttgatattggttattactttcctctgctccacacat 169  Q
      | |||||||  ||  ||||| ||||||||| ||||||||| | ||||||||||    
T  4503029 attattgcttgcattcactttgttattggttactactttcctttactccacacat 4502975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 41446315 - 41446357
Alignment:
Q  24 gtgtatttgtttctcttctctccttatcttttgcttgtggttt 66  Q
    |||| ||||||||||||||||| ||||||||||||||||||||    
T  41446315 gtgtgtttgtttctcttctctctttatcttttgcttgtggttt 41446357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 3491615 - 3491565
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||||||||||||||||| ||||||||| ||||||  ||||||||||||||    
T  3491615 tgctccacacatctttgtttacattggtgtgagtttt--atccgaattcacaa 3491565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 9296639 - 9296675
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagtttt 194  Q
    |||||||||||||||||||||||||||||| ||||||    
T  9296639 tgctccacacatctttgttttcattggtgtgagtttt 9296675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 17490136 - 17490096
Alignment:
Q  29 tttgtttctcttctctccttatcttttgcttgtggttttga 69  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  17490136 tttgtttctcttctctctttatcatttgcttgtggttttga 17490096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 21629819 - 21629784
Alignment:
Q  152 ttcctctgctccacacatctttgttttcattggtgt 187  Q
    ||||| ||||||||||||||||||||||||||||||    
T  21629819 ttcctttgctccacacatctttgttttcattggtgt 21629784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 7815273 - 7815231
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttg 60  Q
    |||||||||| |||||||||||||| || ||||||||||||||    
T  7815273 ttcttggtgtgtttgtttctcttctttctttatcttttgcttg 7815231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 28672102 - 28672151
Alignment:
Q  19 tcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttg 68  Q
    |||| |||| ||||||||||||||||| ||||| |||||||||| |||||    
T  28672102 tctttgtgtgtttgtttctcttctctctttatcctttgcttgtgattttg 28672151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 30833551 - 30833615
Alignment:
Q  47 ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttatt 112  Q
    ||||||| |||||||||||| |  |||||||||||| || ||| ||||||||||||| ||||||||    
T  30833551 ttatcttgtgcttgtggttt-gtgcttttcactttgtttcctagattagatctaggtgttgttatt 30833615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 14291347 - 14291311
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagtttt 194  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  14291347 tgctccacacacctttgttttcattggtgtgagtttt 14291311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 42019868 - 42019821
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttt 66  Q
    |||||||||| ||||||||||||||||| |||| |||||| ||||||||    
T  42019868 ttcttggtgtgtttgtttctcttctctctttat-ttttgcctgtggttt 42019821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 3e-53; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 3038919 - 3038727
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |    
T  3038919 ttggtgtgtttgtttcttttctctctttatcttttgcttgtggttttgaacttttcactttgattactatattagatctaggtgttgttattattgttgt 3038820  T
Q  120 tgcttg-tgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaata 212  Q
    | |||| ||||||||||||||||||||||||||||||| ||||| ||||||| | ||||  |||||| | | |||||| | |||||||||||||    
T  3038819 tacttgttgtttgctttgatattggttattactttcctttgctcgacacatcatagtttgtattggtctga-ttttgagttcgaattcacaata 3038727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 14521676 - 14521480
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgt 117  Q
    |||||||||| ||| ||||| ||||| | ||||||| ||||||||||||||| ||||||||||||||| ||| ||||||||||||| ||||| |||||||    
T  14521676 ttcttggtgtgtttatttcttttctcactttatcttatgcttgtggttttgagcttttcactttgattcctagattagatctaggtgttgttgttattgt 14521577  T
Q  118 t-ttgcttgtgtttgctttgatattggtta----ttactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    | |||||||||||| |||||| ||||||||     |||||| || ||||||||||||| | | |||||||||||| |||||||| |||||||||||||    
T  14521576 tgttgcttgtgtttactttgaaattggttactacgtacttttctttgctccacacatcatag-tttcattggtgtgagttttgagtccgaattcacaa 14521480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 170
Target Start/End: Complemental strand, 9183011 - 9182872
Alignment:
Q  35 tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgttt 130  Q
    ||||||||||||  |||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||| |||  | |||||||||||     
T  9183011 tctcttctctccctttatcttttgcttgtggttttgtacttttcactttgattcctagattagatctaggtgttgttattgttgattattgcttgtgttc 9182912  T
Q  131 gctttgatattggttattactttcctctgctccacacatc 170  Q
     ||||||||||||||| ||||||||| |||||||||||||    
T  9182911 actttgatattggttactactttcctttgctccacacatc 9182872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 26954274 - 26954093
Alignment:
Q  29 tttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtg 127  Q
    ||||||||||||||||| |||  |||| ||||||||||||  ||||||||||||||| ||| |||||||||||||  ||||||| ||||| || ||| ||    
T  26954274 tttgtttctcttctctctttacatttttcttgtggttttgtgcttttcactttgattcctagattagatctaggtgctgttattgttgttatttcttatg 26954175  T
Q  128 tttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||| |||||| |||||||| ||||||| | ||||||||||||| | ||||  |||||||| | |||||| |||||||||||||    
T  26954174 tttactttgaaattggttactactttcttttgctccacacatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 26954093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 210
Target Start/End: Complemental strand, 28137386 - 28137213
Alignment:
Q  37 tcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtgtttgcttt 135  Q
    ||||||| | ||||||||||||||||||| ||  ||||||||||||||| ||| |||||||||| || |||||||| | ||| |||||||||||| ||||    
T  28137386 tcttctccctttatcttttgcttgtggttatgtgcttttcactttgattcctatattagatctatgtgttgttattgtcgttattgcttgtgtttacttt 28137287  T
Q  136 gatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||||||||||| ||||||||| |||||||||| || | ||||  |||||||| | ||||||  ||||||||||||    
T  28137286 gatattggttactactttcctttgctccacacgtcatagtttgtattggtgtga-ttttgagaccgaattcacaa 28137213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 33160347 - 33160192
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt---atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattatt 115  Q
    ||||||| |||||||||||  |||||||||   |||||||| |||||||||||  ||||||||||||||||||| ||||||||||||| |||||| ||||    
T  33160347 ttggtgtgtttgtttctctcttctctcctttttatcttttgtttgtggttttgtgcttttcactttgattactagattagatctaggtgttgttaatatt 33160248  T
Q  116 gtt-ttgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
    ||| |||||||| ||| |||||| |||||||| || |||||| |||||||||||||    
T  33160247 gttgttgcttgtatttactttgaaattggttactattttcctttgctccacacatc 33160192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 16569194 - 16569347
Alignment:
Q  21 ttggtgtatttgtttctc--ttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt 118  Q
    ||||||| ||||||||||  ||||||| ||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||  || |||| |||||    
T  16569194 ttggtgtgtttgtttctctcttctctctttatcttttgcttgtggttttgagcttttcactttgatttctagattagatctaggtgctgctattgttgtt 16569293  T
Q  119 -ttgcttgtgtttgctttgatattggttattactttcc-tctgctccacacatc 170  Q
     ||||||| |||  ||||||| ||||||| |||||||| | |||||||||||||    
T  16569294 attgcttgagttcactttgattttggttactactttccttttgctccacacatc 16569347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 33211173 - 33211060
Alignment:
Q  29 tttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-ttgcttgtg 127  Q
    ||||||||||||||||| ||||||||||||||||||||||   |||||||||||||| ||| ||||||||||||| || ||||| ||||| |||||||||    
T  33211173 tttgtttctcttctctctttatcttttgcttgtggttttgtgattttcactttgattcctagattagatctaggtgttattattgttgttattgcttgtg 33211074  T
Q  128 tttgctttgatatt 141  Q
    ||| |||| |||||    
T  33211073 tttactttaatatt 33211060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 5409065 - 5408894
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  |||||||||||||||||| |  |||||| |||||||| ||| ||||||||||||| |||||||| |||    
T  5409065 ttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggttt-gtgcttttctctttgattcctagattagatctaggtgttgttattgttg 5408967  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
     ||  |||||||| |  ||||||||||||||| ||||||||| ||||||||||||| | ||||  ||||||||    
T  5408966 attattgcttgtgctcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgt 5408894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 5413390 - 5413219
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  |||||||||||||||||| |  |||||| |||||||| ||| ||||||||||||| |||||||| |||    
T  5413390 ttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggttt-gtgcttttctctttgattcctagattagatctaggtgttgttattgttg 5413292  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
     ||  |||||||| |  ||||||||||||||| ||||||||| ||||||||||||| | ||||  ||||||||    
T  5413291 attattgcttgtgctcactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgt 5413219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 31404670 - 31404516
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  |||||||||||||||||| |  |||| | |||||||| ||| |||||||||||||  ||||||| |||    
T  31404670 ttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggttt-gtgctttcctctttgattcctagattagatctaggtgctgttattgttg 31404572  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
     ||  |||||||| |  ||||||||||| ||| || |||||| |||||||||||||    
T  31404571 attattgcttgtgctcactttgatattgattactattttcctttgctccacacatc 31404516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 16452288 - 16452169
Alignment:
Q  52 ttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg--ttttgcttgtgtttgctttgatattggttatta 149  Q
    ||||||||||||||| |  ||||||||||||||| ||| |||||||||||||  ||||||| |||  | |||||||| ||  ||||| ||||||||| ||    
T  16452288 ttttgcttgtggttt-gtgcttttcactttgattcctagattagatctaggtgatgttattgttgattattgcttgtattcactttgttattggttacta 16452190  T
Q  150 ctttcctctgctccacacatc 170  Q
    ||||||| | |||||||||||    
T  16452189 ctttcctttactccacacatc 16452169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 4045587 - 4045671
Alignment:
Q  18 ttcttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggt 103  Q
    |||||||||| ||||||||||||||||| ||||||||| || |||||||||   ||||||| ||||||  || |||||||||||||    
T  4045587 ttcttggtgtgtttgtttctcttctctctttatcttttactcgtggttttgtttttttcac-ttgattcttagattagatctaggt 4045671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 30834531 - 30834375
Alignment:
Q  21 ttggtgtatttgttt--ctcttctctcctt--atcttttgcttgtggttt-tgaacttttcactttgattactaaattagatctaggtattgttattatt 115  Q
    ||||||| |||||||  |||||||||||||  || ||||||||||||||| ||   ||||||||||||||  || |||||||||||||  ||||||| ||    
T  30834531 ttggtgtgtttgtttatctcttctctccttttatattttgcttgtggtttgtgtttttttcactttgattcatagattagatctaggtgctgttattgtt 30834432  T
Q  116 gttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatc 170  Q
    | ||  ||||||  ||  ||||| ||||||||| || |||||| |||||||||||||    
T  30834431 gattattgcttgcattcactttgttattggttactattttcctttgctccacacatc 30834375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 5406195 - 5406027
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  |||||||| ||||||||| |  |||||| |||||||| ||| |||||||||||||   | ||||||||    
T  5406195 ttggtgtgtttgtttctctcttctctccttttatcttttgtttgtggttt-gtgcttttctctttgattcctagattagatctaggt---gctattattg 5406100  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
     ||  |||||||| |  |||| |||||||||| |||||| || | ||||||||||| | ||||  ||||||||    
T  5406099 attattgcttgtgctcactttaatattggttactacttttctttactccacacatcatagtttgtattggtgt 5406027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 5410520 - 5410352
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattg 116  Q
    ||||||| |||||||||||  |||||||||  |||||||| ||||||||| |  |||||| |||||||| ||| |||||||||||||   | ||||||||    
T  5410520 ttggtgtgtttgtttctctcttctctccttttatcttttgtttgtggttt-gtgcttttctctttgattcctagattagatctaggt---gctattattg 5410425  T
Q  117 ttt--tgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgt 187  Q
     ||  |||||||| |  |||| |||||||||| |||||| || | ||||||||||| | ||||  ||||||||    
T  5410424 attattgcttgtgctcactttaatattggttactacttttctttactccacacatcatagtttgtattggtgt 5410352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 5675005 - 5675041
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagtttt 194  Q
    |||||||||||||||||||||||||||||| ||||||    
T  5675005 tgctccacacatctttgttttcattggtgtgagtttt 5675041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 187
Target Start/End: Original strand, 30126032 - 30126061
Alignment:
Q  158 tgctccacacatctttgttttcattggtgt 187  Q
    ||||||||||||||||||||||||||||||    
T  30126032 tgctccacacatctttgttttcattggtgt 30126061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 602957 - 602905
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    ||||||||||||| | ||||  |||||||| |||||||| |||||||||||||    
T  602957 tgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaa 602905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 149093 - 148914
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtttt 120  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| ||| ||||||| ||||| ||||||        ||    
T  149093 ttggtgtatttgtttctcttctctctttatcttttgcttgtggttttgtacttttca-tttgattcctagattagatttaggtgttgtta--------tt 149003  T
Q  121 gcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    |||||||||| ||||||| ||||||| ||||||||| ||||||||||||  | ||||  |||| ||| | |||||| |||||||||||||    
T  149002 gcttgtgtttactttgatgttggttactactttcctttgctccacacattatagtttgtattgatgtga-ttttgagtccgaattcacaa 148914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1668 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold1668
Description:

Target: scaffold1668; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 1494 - 1303
Alignment:
Q  21 ttggtgtatttgtttctcttctctccttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgtt-t 119  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||    |||||||||| ||| ||| |||||||||||||  ||||||  ||||| |    
T  1494 ttggtgtgtttgtttctcttctctctttatcttttgcttgtggttttatgtttttcactttaattcctagattagatctaggtgctgttatcgttgttat 1395  T
Q  120 tgcttgtgttt-gctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
    | |||||||||  |||| |||||| ||| ||||||||| ||||||||||||| | | ||  |||||||| |||||||  | |||||||||||    
T  1394 tacttgtgtttaactttaatattgattactactttcctttgctccacacatcatagattgtattggtgtgagttttgtgttcgaattcacaa 1303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 35 - 170
Target Start/End: Original strand, 114791 - 114930
Alignment:
Q  35 tctcttctctcctt--atcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattattgttt--tgcttgtgttt 130  Q
    ||||||||||||||  ||||||| ||||| ||||||  ||||||||||||||| ||| ||||||| ||||| |||||||| ||| ||  || |||||||     
T  114791 tctcttctctccttttatctttttcttgttgttttgtgcttttcactttgattcctagattagatataggtgttgttattgttgattattgattgtgttc 114890  T
Q  131 gctttgatattggttattactttcctctgctccacacatc 170  Q
     ||||||||||||||||||||||||| |||||||||||||    
T  114891 actttgatattggttattactttcctttgctccacacatc 114930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 20411 - 20218
Alignment:
Q  21 ttggtgtatttgtt--tctcttctctcc--ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttattatt- 115  Q
    ||||||| ||||||  ||||||||||||  ||||||||||||||||||||||   |||||||||||||| ||| |||||||||||||  ||||||| ||     
T  20411 ttggtgtgtttgttcctctcttctctccctttatcttttgcttgtggttttgtgtttttcactttgattcctagattagatctaggtgctgttattgtta 20312  T
Q  116 -gttttgcttgtgtttgctttgatattggttattactttcctctgctccacacatctttgttttcattggtgtaagttttgaatccgaattcacaa 210  Q
      | |||||||||||  |||||| |||||||| ||| ||||| ||||||||||||| | ||||  |||||| | ||  |||| |||||||||||||    
T  20311 attattgcttgtgttcactttgacattggttactaccttcctttgctccacacatcatagtttgtattggtatgag--ttgagtccgaattcacaa 20218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 475 - 511
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagtttt 194  Q
    |||||||||||||||||||||||||||||| ||||||    
T  475 tgctccacacatctttgttttcattggtgtgagtttt 511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 434706 - 434801
Alignment:
Q  21 ttggtgtatttgtttctct--tctctcc---ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttatt 112  Q
    ||||||| |||||||||||  |||||||   ||||||| |||||||| |||||  ||||||||||||||| ||| |||||||||||||  |||||||    
T  434706 ttggtgtgtttgtttctctcttctctcccttttatcttgtgcttgtg-ttttgtgcttttcactttgattcctagattagatctaggtgctgttatt 434801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 8698 - 8634
Alignment:
Q  47 ttatcttttgcttgtggttttgaacttttcactttgattactaaattagatctaggtattgttatt 112  Q
    ||||||| |||||||||||| |  |||||||||||| || ||| ||||||||||||| ||||||||    
T  8698 ttatcttgtgcttgtggttt-gtgcttttcactttgtttcctagattagatctaggtgttgttatt 8634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 24279 - 24315
Alignment:
Q  158 tgctccacacatctttgttttcattggtgtaagtttt 194  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  24279 tgctccacacatctttgtttacattggtgtgagtttt 24315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University