View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_217 (Length: 220)
Name: NF10163A_low_217
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_217 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 24 - 220
Target Start/End: Complemental strand, 34295693 - 34295497
Alignment:
| Q |
24 |
gaacttttccaaaagttctctaatataatcatgctgagataataagagaccatacttggttggaattagttcaattctaaggaaataatgagggaagcca |
123 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34295693 |
gaacttttccaaaagttctctaatataaccatgctgagataataagagaccatacttggttggaattagttcaattccaaggaaataatgagggaagcca |
34295594 |
T |
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| Q |
124 |
agttgtttgagagagaacttagtggaaagctctgtcatgaattgttgtaaaaatgtagtgctgctacctgttaaaagtaaatcataaacatatacta |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34295593 |
agttgtttgagagagaacttagtggaaagctctgtcatgaattgttgtaaaaatgtagtgctgctacctgttaaaagtaaatcatcaacatatacta |
34295497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 24494666 - 24494862
Alignment:
| Q |
24 |
gaacttttccaaaagttctctaatataatcatgctgagataataagagaccatacttggttggaattagttcaattctaaggaaataatgagggaagcca |
123 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24494666 |
gaacttttccaaaagttctctaatataaccatgctgagataataagagaccatacttggttggaattagttcaattccaaggaaataatgagggaagcca |
24494765 |
T |
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| Q |
124 |
agttgtttgagagagaacttagtggaaagctctgtcatgaattgttgtaaaaatgtagtgctgctacctgttaaaagtaaatcataaacatatacta |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24494766 |
agttgtttgagagagaacttagtggaaagctctgtcatgaattgttgtaaaaatgtagtgctgctacctgttaaaagtaaatcatcaacatatacta |
24494862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 24486332 - 24486528
Alignment:
| Q |
24 |
gaacttttccaaaagttctctaatataatcatgctgagataataagagaccatacttggttggaattagttcaattctaaggaaataatgagggaagcca |
123 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24486332 |
gaacttttccaaaagttctctaatataaccatgctgagataataagagaccatacttggttggaattagttcaattccaaggaaataatgagggaagcca |
24486431 |
T |
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| Q |
124 |
agttgtttgagagagaacttagtggaaagctctgtcatgaattgttgtaaaaatgtagtgctgctacctgttaaaagtaaatcataaacatatacta |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
24486432 |
agttgtttgagagagaacttagtggaaagctctgtcatgaattgttgtaaaaatgtagtgctgctacctgtgaaaagtaaatcatcaacatatacta |
24486528 |
T |
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Target: scaffold0039 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 58865 - 58922
Alignment:
| Q |
109 |
taatgagggaagccaagttgtttgagagagaacttagtggaaagctctgtcatgaatt |
166 |
Q |
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| T |
58865 |
taatgaggaaatccaagttgtttgagagaaaactttgttgaaagttctgtcatgaatt |
58922 |
T |
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