View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10163A_low_219 (Length: 220)

Name: NF10163A_low_219
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10163A_low_219
NF10163A_low_219
[»] chr5 (4 HSPs)
chr5 (65-197)||(32268820-32268952)
chr5 (38-196)||(41900158-41900316)
chr5 (22-94)||(32268755-32268825)
chr5 (113-188)||(41886271-41886346)
[»] chr7 (4 HSPs)
chr7 (39-106)||(15091347-15091414)
chr7 (42-104)||(10168806-10168868)
chr7 (42-104)||(10176331-10176393)
chr7 (126-167)||(10616209-10616250)
[»] chr4 (12 HSPs)
chr4 (39-100)||(2460597-2460658)
chr4 (45-118)||(2367656-2367729)
chr4 (51-100)||(2547544-2547593)
chr4 (39-104)||(55907434-55907499)
chr4 (45-97)||(2381378-2381430)
chr4 (39-99)||(6007665-6007725)
chr4 (45-103)||(566629-566687)
chr4 (51-96)||(12124836-12124881)
chr4 (51-96)||(12126892-12126937)
chr4 (45-97)||(2486313-2486365)
chr4 (45-97)||(5035628-5035680)
chr4 (66-106)||(8445271-8445311)
[»] chr3 (2 HSPs)
chr3 (39-106)||(513426-513493)
chr3 (53-104)||(51763146-51763197)
[»] chr2 (2 HSPs)
chr2 (39-104)||(1036176-1036241)
chr2 (51-104)||(44575177-44575230)
[»] chr6 (1 HSPs)
chr6 (45-105)||(14821628-14821688)
[»] chr8 (1 HSPs)
chr8 (45-104)||(32152212-32152271)
[»] chr1 (1 HSPs)
chr1 (45-94)||(15837967-15838016)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 6e-67; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 65 - 197
Target Start/End: Original strand, 32268820 - 32268952
Alignment:
Q  65 ggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtctttcaagaatttgaagacacattcccaacactcatctggtagatat 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32268820 ggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtctttcaagaatttgaagacacattcccaacactcatctggtaaatat 32268919  T
Q  165 gaaccagaaatcattgattttcttcttcttttt 197  Q
    |||||||||||||||||||||||||||||||||    
T  32268920 gaaccagaaatcattgattttcttcttcttttt 32268952  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 38 - 196
Target Start/End: Complemental strand, 41900316 - 41900158
Alignment:
Q  38 aagagataatcgaagacggttggtgaaggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtctttcaagaatttgaagaca 137  Q
    |||||| |||||||||  |||||||| |||||| ||||||||||||||||  ||||||||||||||| |  |||| | |||||| | |||||||||||||    
T  41900316 aagagagaatcgaagagtgttggtgatggagagaaactgtttggagacgagtgagagagatttcaagtagtgattatcgtctttgaggaatttgaagaca 41900217  T
Q  138 cattcccaacactcatctggtagatatgaaccagaaatcattgattttcttcttctttt 196  Q
    |||||||||||||||||||||| ||||||||||||| | || |||||||||||| ||||    
T  41900216 cattcccaacactcatctggtaaatatgaaccagaacttatcgattttcttcttttttt 41900158  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 32268755 - 32268825
Alignment:
Q  22 ggatcatagactgtgaaagagataatcgaagacggttggtgaaggagagtaactgtttggagacgatggagag 94  Q
    |||||||||||||||| |||||  |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32268755 ggatcatagactgtgagagaga--atcgaagacggttggtgatggagagtaactgtttggagacgatggagag 32268825  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 41886346 - 41886271
Alignment:
Q  113 gttgtctttcaagaatttgaagacacattcccaacactcatctggtagatatgaaccagaaatcattgattttctt 188  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||| |||  |||||  |||||||| |||||||    
T  41886346 gttgtctttcaggaatttgaagacacattcccaacactcatcaggtaaatagaaaccaccaatcattgtttttctt 41886271  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 15091414 - 15091347
Alignment:
Q  39 agagataatcgaagacggttggtgaaggagagtaactgtttggagacgatggagagagatttcaagca 106  Q
    ||||| ||| |||||| |||||||| |||||| |||||||||||||||| ||||||||| ||||||||    
T  15091414 agagaaaatagaagactgttggtgatggagaggaactgtttggagacgagggagagagaattcaagca 15091347  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 10168868 - 10168806
Alignment:
Q  42 gataatcgaagacggttggtgaaggagagtaactgtttggagacgatggagagagatttcaag 104  Q
    ||||||||||||  |||||||| |||||| |||||||||||||| | ||| ||||| ||||||    
T  10168868 gataatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10168806  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 10176393 - 10176331
Alignment:
Q  42 gataatcgaagacggttggtgaaggagagtaactgtttggagacgatggagagagatttcaag 104  Q
    ||||||||||||  |||||||| |||||| |||||||||||||| | ||| ||||| ||||||    
T  10176393 gataatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10176331  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 10616209 - 10616250
Alignment:
Q  126 aatttgaagacacattcccaacactcatctggtagatatgaa 167  Q
    |||||||||| |||||||||||||||||| |||| |||||||    
T  10616209 aatttgaagatacattcccaacactcatcaggtaaatatgaa 10616250  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 2460597 - 2460658
Alignment:
Q  39 agagataatcgaagacggttggtgaaggagagtaactgtttggagacgatggagagagattt 100  Q
    ||||| ||||| ||||| ||||||| |||||| |||||||||||||| ||||||||||||||    
T  2460597 agagagaatcggagacgattggtgatggagaggaactgtttggagaccatggagagagattt 2460658  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 2367729 - 2367656
Alignment:
Q  45 aatcgaagacggttggtgaaggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtc 118  Q
    ||||| ||||||||||||| |||||| || ||||||||||||||||| |||| || |||| | || ||||||||    
T  2367729 aatcggagacggttggtgatggagagaaattgtttggagacgatggaaagaggttccaagtagcggttgttgtc 2367656  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 2547544 - 2547593
Alignment:
Q  51 agacggttggtgaaggagagtaactgtttggagacgatggagagagattt 100  Q
    ||||||||||||| ||| || ||||||||||||||||||||||| |||||    
T  2547544 agacggttggtgatggacagaaactgtttggagacgatggagagcgattt 2547593  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 55907499 - 55907434
Alignment:
Q  39 agagataatcgaagacggttggtgaaggagagtaactgtttggagacgatggagagagatttcaag 104  Q
    ||||| |||||||||  ||||||||  ||||| ||||||||||||||| | |||||||||||||||    
T  55907499 agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 55907434  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 2381430 - 2381378
Alignment:
Q  45 aatcgaagacggttggtgaaggagagtaactgtttggagacgatggagagaga 97  Q
    ||||| |||| ||||||||  |||||||||||||||||||||||||| |||||    
T  2381430 aatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagaga 2381378  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 6007665 - 6007725
Alignment:
Q  39 agagataatcgaagacggttggtgaaggagagtaactgtttggagacgatggagagagatt 99  Q
    ||||| ||||| |||| |||||||| |||||| |||||||| ||||||| |||||||||||    
T  6007665 agagagaatcggagactgttggtgatggagaggaactgtttcgagacgagggagagagatt 6007725  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 566629 - 566687
Alignment:
Q  45 aatcgaagacggttggtgaaggagagtaactgtttggagacgatggagagagatttcaa 103  Q
    |||||||||| || ||||| |||||| |||||||||||||| | ||||||||| |||||    
T  566629 aatcgaagactgtcggtgatggagagaaactgtttggagactaaggagagagaattcaa 566687  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 12124836 - 12124881
Alignment:
Q  51 agacggttggtgaaggagagtaactgtttggagacgatggagagag 96  Q
    ||||||||||||| |||||| || ||||||||||| ||||||||||    
T  12124836 agacggttggtgatggagagaaattgtttggagacaatggagagag 12124881  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 12126892 - 12126937
Alignment:
Q  51 agacggttggtgaaggagagtaactgtttggagacgatggagagag 96  Q
    ||||||||||||| |||||| || ||||||||||| ||||||||||    
T  12126892 agacggttggtgatggagagaaattgtttggagacaatggagagag 12126937  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 2486313 - 2486365
Alignment:
Q  45 aatcgaagacggttggtgaaggagagtaactgtttggagacgatggagagaga 97  Q
    ||||| ||||||||||||| ||| || |||||||| ||||||| |||||||||    
T  2486313 aatcggagacggttggtgatggacagaaactgttttgagacgagggagagaga 2486365  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 5035628 - 5035680
Alignment:
Q  45 aatcgaagacggttggtgaaggagagtaactgtttggagacgatggagagaga 97  Q
    ||||||||||||||||||| |||||| |||||||| || |||| ||| |||||    
T  5035628 aatcgaagacggttggtgatggagagaaactgttttgaaacgaaggaaagaga 5035680  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 8445311 - 8445271
Alignment:
Q  66 gagagtaactgtttggagacgatggagagagatttcaagca 106  Q
    |||||||||||||| ||||||||||||||||| || |||||    
T  8445311 gagagtaactgttttgagacgatggagagagactttaagca 8445271  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 513493 - 513426
Alignment:
Q  39 agagataatcgaagacggttggtgaaggagagtaactgtttggagacgatggagagagatttcaagca 106  Q
    ||||| ||||| |||  |||||||| ||||||||||||||| ||||||  ||||||||||||||||||    
T  513493 agagagaatcggagattgttggtgatggagagtaactgttttgagacggcggagagagatttcaagca 513426  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 51763197 - 51763146
Alignment:
Q  53 acggttggtgaaggagagtaactgtttggagacgatggagagagatttcaag 104  Q
    ||||| ||||| |||||| ||||||||||| |||||||||||||| ||||||    
T  51763197 acggtgggtgatggagaggaactgtttggaaacgatggagagagaattcaag 51763146  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 1036241 - 1036176
Alignment:
Q  39 agagataatcgaagacggttggtgaaggagagtaactgtttggagacgatggagagagatttcaag 104  Q
    ||||| |||||||||  ||||||||  ||||| ||||||||||||||| | |||||||||||||||    
T  1036241 agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 1036176  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 44575230 - 44575177
Alignment:
Q  51 agacggttggtgaaggagagtaactgtttggagacgatggagagagatttcaag 104  Q
    ||||| |||||||  ||||| |||||||| ||||||||||||||||| ||||||    
T  44575230 agacgattggtgattgagagaaactgttttgagacgatggagagagacttcaag 44575177  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 14821628 - 14821688
Alignment:
Q  45 aatcgaagacggttggtgaaggagagtaactgtttggagacgatggagagagatttcaagc 105  Q
    ||||||||||| |||||||  ||||| ||||| |||||||||| ||||||| |||||||||    
T  14821628 aatcgaagacgattggtgatagagaggaactgcttggagacgagggagagacatttcaagc 14821688  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 32152212 - 32152271
Alignment:
Q  45 aatcgaagacggttggtgaaggagagtaactgtttggagacgatggagagagatttcaag 104  Q
    ||||| |||| |||||||| |||||| |||||||||||||||| |||||| || ||||||    
T  32152212 aatcggagactgttggtgatggagaggaactgtttggagacgagggagagtgaattcaag 32152271  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 15838016 - 15837967
Alignment:
Q  45 aatcgaagacggttggtgaaggagagtaactgtttggagacgatggagag 94  Q
    ||||| ||||||||||||| |||||| |||||||||||||| || |||||    
T  15838016 aatcggagacggttggtgatggagagaaactgtttggagaccatcgagag 15837967  T

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