View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_221 (Length: 218)
Name: NF10163A_low_221
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_221 |
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| [»] scaffold0896 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 7e-82; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 7140536 - 7140355
Alignment:
| Q |
20 |
agtacgaatcgatgtcagaaaagttcaacatcttcggtcttacttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcctcaacga |
119 |
Q |
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| T |
7140536 |
agtacgaatcgatgtcagaaaagttcaacatcttcagtcttacttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcgtcaacga |
7140437 |
T |
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| Q |
120 |
atattatttccaaattctttgaatttcccagcataaacctacttgtttttagggtcctttgactttggtgtggacgatgatg |
201 |
Q |
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| T |
7140436 |
acattatttcaaaattctttgaattttccagcattaacctacttctttttagggtcctttgactttggtgtggacgatgatg |
7140355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 8656449 - 8656270
Alignment:
| Q |
22 |
tacgaatcgatgtcagaaaagttcaacatcttcggtcttacttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcctcaacgaat |
121 |
Q |
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| T |
8656449 |
tacgaatcgatgtcaaaaaagttaaacatcttcagtcttacttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcctcaacgaac |
8656350 |
T |
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| Q |
122 |
attatttccaaattctttgaatttcccagcataaacctacttgtttttagggtcctttgactttggtgtggacgatgatg |
201 |
Q |
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| T |
8656349 |
attatttccaaattctttgaaatttccagcattaacctacttatttttagggtcctttgactttggtgtggacgatgatg |
8656270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 55 - 197
Target Start/End: Complemental strand, 8680112 - 8679970
Alignment:
| Q |
55 |
ggtcttacttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcctcaacgaatattatttccaaattctttgaatttcccagcata |
154 |
Q |
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| T |
8680112 |
ggtcttacttcttttcatgtgacactttaacatcacttcacatttctgttgcttttcctcaacgaacattatttccaaattctttgaattttccatgatt |
8680013 |
T |
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| Q |
155 |
aacctacttgtttttagggtcctttgactttggtgtggacgat |
197 |
Q |
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| T |
8680012 |
aacctacttgtttttagggtcctttgactttggtgtggacgat |
8679970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 7115269 - 7115153
Alignment:
| Q |
76 |
acactttaacatctcttcacatttgtgttgcttttcctcaacgaatattatttccaaattctttgaatttcccagcataaacctacttgtttttagggtc |
175 |
Q |
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| T |
7115269 |
acactttaacatctcttcacgtttctgttgcttctcctcaaagaactttatttccaaattctttgaattttccagcattaactagtttgtctttatggtc |
7115170 |
T |
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| Q |
176 |
ctttgactttggtgtgg |
192 |
Q |
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| T |
7115169 |
ctttgactttcgtgtgg |
7115153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 7120341 - 7120225
Alignment:
| Q |
76 |
acactttaacatctcttcacatttgtgttgcttttcctcaacgaatattatttccaaattctttgaatttcccagcataaacctacttgtttttagggtc |
175 |
Q |
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|||||||||||||||||||| ||| |||||||| ||||||| ||| ||||||||||||||||||||||| ||||||| ||| |||| |||| |||| |
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| T |
7120341 |
acactttaacatctcttcacgtttctgttgcttctcctcaaagaactttatttccaaattctttgaattttccagcattaactagtttgtctttatggtc |
7120242 |
T |
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| Q |
176 |
ctttgactttggtgtgg |
192 |
Q |
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| T |
7120241 |
ctttgactttcgtgtgg |
7120225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 7123745 - 7123629
Alignment:
| Q |
76 |
acactttaacatctcttcacatttgtgttgcttttcctcaacgaatattatttccaaattctttgaatttcccagcataaacctacttgtttttagggtc |
175 |
Q |
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|||||||||||||||||||| ||| |||||||| ||||||| ||| ||||||||||||||||||||||| ||||||| ||| |||| |||| |||| |
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| T |
7123745 |
acactttaacatctcttcacgtttctgttgcttctcctcaaagaactttatttccaaattctttgaattttccagcattaactagtttgtctttacggtc |
7123646 |
T |
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| Q |
176 |
ctttgactttggtgtgg |
192 |
Q |
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| T |
7123645 |
ctttgactttcgtgtgg |
7123629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 170
Target Start/End: Complemental strand, 7175144 - 7175036
Alignment:
| Q |
62 |
cttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcctcaacgaatattatttccaaattctttgaatttcccagcataaacctac |
161 |
Q |
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||||||||||||| ||||||||||||||||| || ||| | || || | ||||| || |||||||||||||||| ||||||| ||||| | |||| || |
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| T |
7175144 |
cttcttttcatgtcacactttaacatctcttaacctttctttttctgattctcaagaaacattatttccaaattctctgaattttccagctttaaccaac |
7175045 |
T |
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| Q |
162 |
ttgttttta |
170 |
Q |
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|||| |||| |
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| T |
7175044 |
ttgtcttta |
7175036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0896
Description:
Target: scaffold0896; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 2595 - 2635
Alignment:
| Q |
76 |
acactttaacatctcttcacatttgtgttgcttttcctcaa |
116 |
Q |
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| T |
2595 |
acactttaacatctcttcacgtttctgttgcttctcctcaa |
2635 |
T |
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