View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10163A_low_224 (Length: 212)
Name: NF10163A_low_224
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_224 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 29664078 - 29664248
Alignment:
| Q |
20 |
atgtcaattagaaatctcataaaatcaactttgatttttaactagtgtttaagaaaactaaaattaataccatctggtttggggtttttgtaactgtcac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29664078 |
atgtcaattagaaatctcataaaatcaactttgatttttaactagtgtttaagaaaactaaaattaataccatctggtttggggtttttgtaactgtcac |
29664177 |
T |
|
| Q |
120 |
actcctacactcccttcttcacctcatcaccaaaatatgtctcaacactggtctgattattgatagatttaaa |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29664178 |
actcctacactcccttcttcacctcatcaccaaa--atgtctcaacactggtctgattattgatagatttaaa |
29664248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University