View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_23 (Length: 420)
Name: NF10163A_low_23
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_23 |
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| [»] scaffold0632 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 119 - 366
Target Start/End: Complemental strand, 41788149 - 41787902
Alignment:
| Q |
119 |
aacatgttcttcacatagaatagttctccaccctgaattccacatcatccatctccaatagtaaagaaaacaagaacttatttttgagtatcaagaacac |
218 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41788149 |
aacatgttcttcacatagaacagttctccaccctgaattccacatcatccatctccaatggtaaagaaaacaagaacttatttttgagtatcaagaacac |
41788050 |
T |
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| Q |
219 |
tttctagaactagcattggagttgctcttagtccaagtaaaaacggcagagctgagagagacgaatgaatgaaaaactgagacatatgtcgaatagggtc |
318 |
Q |
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||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41788049 |
tttttagaactaggattggagttgctcttagtccaagtaaaaacggcagagctgagagagacgaatgaatgaaaaactgagacatatgtcgaatagggtc |
41787950 |
T |
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| Q |
319 |
cagagttggactacgtggttttacctgatagatatagtctgttataac |
366 |
Q |
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| T |
41787949 |
cagaggtggactacgtggttttacctgatagatatagtctgttataac |
41787902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 123 - 249
Target Start/End: Complemental strand, 10866180 - 10866054
Alignment:
| Q |
123 |
tgttcttcacatagaatagttctccaccctgaattccacatcatccatctccaatagtaaagaaaacaagaacttatttttgagtatcaagaacactttc |
222 |
Q |
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|||||| |||| | || ||||||||| ||| |||||||||||||||||| |||| |||||||||||||||| || ||||||||||||||||||||| || |
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| T |
10866180 |
tgttctccacagaaaacagttctccaacctcgattccacatcatccatctgcaatggtaaagaaaacaagaatttgtttttgagtatcaagaacactctc |
10866081 |
T |
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| Q |
223 |
tagaactagcattggagttgctcttag |
249 |
Q |
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| T |
10866080 |
tagaactagcattggagttgctcttag |
10866054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 1331779 - 1331648
Alignment:
| Q |
119 |
aacatgttcttcacatagaatagttctccaccctgaattccacatcatccatctccaatagtaaagaaaacaagaacttatttttgag-tatcaagaaca |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||| |
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| T |
1331779 |
aacatgttcttcacatagagcagttctccaccctgaattccacatcatccatctccaatggtaaagaaaacaagaacttgcttttgagttatcaagaaca |
1331680 |
T |
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| Q |
218 |
ctttctagaactagcattggagttgctcttag |
249 |
Q |
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| T |
1331679 |
ccgtctagaactagcattggagttgctcttag |
1331648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0632 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0632
Description:
Target: scaffold0632; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 114 - 248
Target Start/End: Original strand, 1758 - 1893
Alignment:
| Q |
114 |
gttgtaacatgttcttcacatagaatagttctccaccctgaattccacatcatccatctccaatagtaaagaaa-acaagaacttatttttgagtatcaa |
212 |
Q |
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|||| |||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||| |
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| T |
1758 |
gttggaacatgttcttcacatagaacagttctccatcctggattccacatcatccatctccaatggtaaagaaacacaagaacttgtttttgagtatcaa |
1857 |
T |
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| Q |
213 |
gaacactttctagaactagcattggagttgctctta |
248 |
Q |
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| T |
1858 |
gaacacagtctagaactagcattgaagttgctctta |
1893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 123 - 248
Target Start/End: Complemental strand, 21490754 - 21490629
Alignment:
| Q |
123 |
tgttcttcacatagaatagttctccaccctgaattccacatcatccatctccaatagtaaagaaaacaagaacttatttttgagtatcaagaacactttc |
222 |
Q |
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|||||| ||||||||| |||||||| | || ||||||||||||||||||||||| ||||||||| |||||||||| |||||||| |||||||||| | |
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| T |
21490754 |
tgttctccacatagaacggttctccaacatggattccacatcatccatctccaatggtaaagaaagcaagaacttagttttgagtttcaagaacaccgtg |
21490655 |
T |
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| Q |
223 |
tagaactagcattggagttgctctta |
248 |
Q |
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| |||||||||||||||||||||||| |
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| T |
21490654 |
tggaactagcattggagttgctctta |
21490629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 119 - 246
Target Start/End: Complemental strand, 34871039 - 34870911
Alignment:
| Q |
119 |
aacatgttcttcacatagaatagttctccaccctgaattccacatcatccatctccaatagtaaagaaaacaagaactt-atttttgagtatcaagaaca |
217 |
Q |
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|||||||||| |||| |||| ||||||||| |||| | |||||||||| |||||||||||| ||||||| ||||||||| ||||||||| ||||||||| |
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| T |
34871039 |
aacatgttctccacagagaacagttctccaacctggagtccacatcattcatctccaatagcaaagaaagcaagaacttgttttttgagtttcaagaaca |
34870940 |
T |
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| Q |
218 |
ctttctagaactagcattggagttgctct |
246 |
Q |
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| T |
34870939 |
atgtgtagaactaccgttgtagttgctct |
34870911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 48255476 - 48255436
Alignment:
| Q |
209 |
tcaagaacactttctagaactagcattggagttgctcttag |
249 |
Q |
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||||||||| | | ||||||||||||||||||||||||||| |
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| T |
48255476 |
tcaagaacaatgtgtagaactagcattggagttgctcttag |
48255436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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