View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_231 (Length: 208)
Name: NF10163A_low_231
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_231 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 7e-85; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 10706792 - 10706618
Alignment:
| Q |
21 |
tcatgcaaggtcttaaggataatgctgcaaacctgcacggatcatcgattattggaggagcaccccgtctccaattgcggttgtcatctgttgctccacc |
120 |
Q |
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| T |
10706792 |
tcatgcaaggtcttaaggataatgctgcaaacctgcacggatcatcgataattggaggagcaccccgtctccaattgcggttgtcatctgttgctccacc |
10706693 |
T |
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| Q |
121 |
tcctttgtgtaagaatgtaatgccaaatggcccaaatctgagcacacttaattctgacaattcttctcagtcgac |
195 |
Q |
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| T |
10706692 |
tcctttgtgtaagaatgtaatgccaaatggcccaaatctgagcacacttgattctgacaattctcctaagtcgac |
10706618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 6387473 - 6387573
Alignment:
| Q |
95 |
ttgcggttgtcatctgttgctccacctcctttgtgtaagaatgtaatgccaaatggcccaaatctgagcacacttaattctgacaattcttctcagtcga |
194 |
Q |
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| T |
6387473 |
ttgcagttgtcatctgttgctccaccccctttgtgtaggaatgtaatgccaaatggcccaaatctgagcacacttaattctgacaattctcctaagtcga |
6387572 |
T |
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| Q |
195 |
c |
195 |
Q |
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| T |
6387573 |
c |
6387573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 6387101 - 6387161
Alignment:
| Q |
21 |
tcatgcaaggtcttaaggataatgctgcaaacctgcacggatcatcgattattggaggagc |
81 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| |
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| T |
6387101 |
tcatgcaaggtcttaaggatattgctgcaaaccctcacggatcatctataattggaggagc |
6387161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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