View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10163A_low_232 (Length: 208)
Name: NF10163A_low_232
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_232 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 33430392 - 33430555
Alignment:
| Q |
17 |
atatatatgtgtgtcttaagatcatcacatatatcaaacacatcacacacaaaatataagacatttaaactgcataagtgatcgtcaatcatttaaactt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33430392 |
atatatatgtgtgtcttaagatcatcacatatatcaaacacatcacacacaaaatataagacatttaaactgcataagtgatcgtcaatcatttaaactt |
33430491 |
T |
|
| Q |
117 |
cactatcattaagcgattgagaagaaatcaatagctggcttgtgcttactcttcctcgttctct |
180 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33430492 |
cactatcattaagcgatggagaagaaatcaatagctggcttgtgcttactcttcctcgttctct |
33430555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 33435274 - 33435334
Alignment:
| Q |
120 |
tatcattaagcgattgagaagaaatcaatagctggcttgtgcttactcttcctcgttctct |
180 |
Q |
| |
|
||||| ||||| || ||||||||| || |||| ||||| ||||| |||||||||||||||| |
|
|
| T |
33435274 |
tatcactaagctatggagaagaaaacactagcaggcttatgcttcctcttcctcgttctct |
33435334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University