View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_239 (Length: 203)
Name: NF10163A_low_239
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_239 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 31 - 183
Target Start/End: Complemental strand, 29467304 - 29467152
Alignment:
| Q |
31 |
agaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttga |
130 |
Q |
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| T |
29467304 |
agaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttga |
29467205 |
T |
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| Q |
131 |
tttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaattt |
183 |
Q |
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| T |
29467204 |
tttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaattt |
29467152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 31 - 185
Target Start/End: Complemental strand, 29452830 - 29452676
Alignment:
| Q |
31 |
agaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttga |
130 |
Q |
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| T |
29452830 |
agaaggccgttacatgaactgaacagagagatgttgttgttggggagtttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttga |
29452731 |
T |
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| Q |
131 |
tttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaattttg |
185 |
Q |
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| T |
29452730 |
tttggtagaaaacagagttgtgtcgaaggattaaggaacgattgagggaattttg |
29452676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 31 - 182
Target Start/End: Original strand, 29423884 - 29424035
Alignment:
| Q |
31 |
agaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttga |
130 |
Q |
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| T |
29423884 |
agaaggccgttacatgatccgaccagagagatgaagttgttggagcctttgaaaggaggattgagtttaacggcggtagttaggttagagaaatcgttga |
29423983 |
T |
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| Q |
131 |
tttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatt |
182 |
Q |
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| T |
29423984 |
tttggtagaaatcagagttgtgtcgaaggattaaggaacgattgaaggaatt |
29424035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 31 - 185
Target Start/End: Complemental strand, 29442838 - 29442684
Alignment:
| Q |
31 |
agaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttga |
130 |
Q |
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|||||||||||||||||||| | ||||| ||| |||| |||| | ||||||||| |||||||||| || ||||||||||||||||||||| | || |
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| T |
29442838 |
agaaggccgttacatgaacctagaagagacatgcggttgatgggacctgtgaaaggaatgttgagtttaacgccggtggttaggttagagaaatcttcga |
29442739 |
T |
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| Q |
131 |
tttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaattttg |
185 |
Q |
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| T |
29442738 |
tttggtagaaatcaaagttgtgtcgaaggattaaggaacgattgaggaaattttg |
29442684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 31 - 184
Target Start/End: Original strand, 14550990 - 14551143
Alignment:
| Q |
31 |
agaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttga |
130 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14550990 |
agaagaccgttacatgaaccgagcagagagatgaagttgttgaagccttcgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttga |
14551089 |
T |
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| Q |
131 |
tttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttt |
184 |
Q |
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| T |
14551090 |
tttggtagagattggacttgtgtcgaaggattaaggaacaattgagggaatttt |
14551143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 8572882 - 8572827
Alignment:
| Q |
129 |
gatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttt |
184 |
Q |
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||||||||||| |||| ||||| |||||| ||||||| |||||||||||||||||| |
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| T |
8572882 |
gatttggtagatatcgtagttgcgtcgaatgattaaggaacgattgagggaatttt |
8572827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 9292699 - 9292751
Alignment:
| Q |
132 |
ttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttt |
184 |
Q |
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|||||||| |||| | |||||||||||||||||| | || ||||||||||||| |
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| T |
9292699 |
ttggtagagatcgaatttgtgtcgaaggattaaggatcggttgagggaatttt |
9292751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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