View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10163A_low_27 (Length: 410)

Name: NF10163A_low_27
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10163A_low_27
NF10163A_low_27
[»] chr1 (1 HSPs)
chr1 (9-405)||(45099059-45099455)
[»] chr6 (2 HSPs)
chr6 (109-329)||(17348638-17348858)
chr6 (270-330)||(17363885-17363945)


Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 9 - 405
Target Start/End: Original strand, 45099059 - 45099455
Alignment:
Q  9 aacaatatcacaaaaatgcaaccgaatcaaatgtgaaacgccatcacgagccacaggaaaattccatgttatattaaaccttgaagctaaacttgagttt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45099059 aacaatatcacaaaaatgcaaccgaatcaaatgtgaaacgccatcacgagccacaggaaaattccatgttatattaaaccttgaagctaaacttgagttt 45099158  T
Q  109 tccctattcatctgttgagcagtcatgtaaacattttcaggtgcgatctctggagtagcacctcccttctggtaatcaggtgtatgagtgcttactgcat 208  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45099159 tccctattcatctgttgagcagtcatgtaaacattttcaggcgcgatctctggagtagcacctcccttctggtaatcaggtgtatgagtgcttactgcat 45099258  T
Q  209 gtttagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagggtatcattaaaaggagttattttcatacctcctacattaat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45099259 gtttagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagggtgtcattaaaaggagttattttcatacctcctacattaat 45099358  T
Q  309 cctatgaacagtttccaaaacctgagatgaaagatttctatactcttccacaccagaaggaccaaccaaccttgttccataatctataacaaaatct 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45099359 cctatgaacagtttccaaaacctgagatgaaagatttctatactcttccacaccagaaggaccaaccaaccttgttccataatctataacaaaatct 45099455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 109 - 329
Target Start/End: Complemental strand, 17348858 - 17348638
Alignment:
Q  109 tccctattcatctgttgagcagtcatgtaaacattttcaggtgcgatctctggagtagcacctcccttctggtaatcaggtgtatgagtgcttactgcat 208  Q
    |||||||||||||  ||||||||||| |||||| | || || |||||||||  ||  || || || ||||| ||||| ||||| |||||||| ||| ||     
T  17348858 tccctattcatctcctgagcagtcatataaacactatccggcgcgatctctctagccgcgccccctttctgataatctggtgtgtgagtgctcactacag 17348759  T
Q  209 gtttagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagggtatcattaaaaggagttattttcatacctcctacattaat 308  Q
      |||||||| ||||||||||||| | |||||| |||||||||||| ||||||||||||||||||||||||||||||| |||   |||||| ||||||||    
T  17348758 ccttagctgcatccttaaaaaccagaaaatccttatcaggaatccatgttctccaaagggtatcattaaaaggagttaatttttcacctccaacattaat 17348659  T
Q  309 cctatgaacagtttccaaaac 329  Q
    |||||||| |||||| |||||    
T  17348658 cctatgaatagtttctaaaac 17348638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 330
Target Start/End: Complemental strand, 17363945 - 17363885
Alignment:
Q  270 atcattaaaaggagttattttcatacctcctacattaatcctatgaacagtttccaaaacc 330  Q
    ||||||||| ||||||||||||| |||  | || ||||||||||||| |||||| ||||||    
T  17363945 atcattaaagggagttattttcaaaccatcaacgttaatcctatgaatagtttctaaaacc 17363885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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