View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_29 (Length: 397)
Name: NF10163A_low_29
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_29 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 13 - 397
Target Start/End: Original strand, 4301491 - 4301875
Alignment:
| Q |
13 |
catcatatgggcttgagacaacgaagggttccatcatagcaaaacgggtgtgtttcatggttaaattagtttggagaccattcattgcatcatcagttga |
112 |
Q |
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| T |
4301491 |
catcatatgggcttgagacaacgaagggctccatcatagcaaaacgggtgtgtttcatggttaaattagtttggagaccattcattgcatcatcagttga |
4301590 |
T |
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| Q |
113 |
gaaatcaatcaaagccaccaatggttatgtttcacgaaaggaacataagtcaaattccaagaaagatgattctgaagacattgatgaagccaattctgaa |
212 |
Q |
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| T |
4301591 |
gaaatcaatcaaagccaccaatggttatgtttcacgaaaggaacataagtcaaattccaagaaagatgattctgaagacattgatgaagccaattctgaa |
4301690 |
T |
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| Q |
213 |
gtgtatgtcttgagttttgctagatacaagaatatagtgatgttgttggggtactgttgcaaagaaaataaaaatattatcatatatgaatttatttgcg |
312 |
Q |
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| T |
4301691 |
gtgtatgtcttgagttttgctagatacaagaatatagtgatgttgttggggtactgttgcaaagaaaataaaaatattatcatatatgaatttatttgcg |
4301790 |
T |
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| Q |
313 |
ataagtctcttcattggtatttatttgaaaatagtgaagtagttattgattggcctcgaagatatggtattgcacttgggattgt |
397 |
Q |
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| T |
4301791 |
ataagtctcttcattggtatttatttgaaaatagtgaagtagttattgattggcctcgaagatatggtattgcacttgggattgt |
4301875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 9e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 205 - 339
Target Start/End: Original strand, 40668093 - 40668227
Alignment:
| Q |
205 |
attctgaagtgtatgtcttgagttttgctagatacaagaatatagtgatgttgttggggtactgttgcaaagaaaataaaaatattatcatatatgaatt |
304 |
Q |
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| T |
40668093 |
attctgaggtttatgtcttgagttttgctagacacaagaatatagtgatgctgttggggtattgttgcaaagaaaataaaaatattctcatatatgaata |
40668192 |
T |
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| Q |
305 |
tatttgcgataagtctcttcattggtatttatttg |
339 |
Q |
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| T |
40668193 |
tatttgcaataagtctcttcattggcatttatttg |
40668227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 90 - 213
Target Start/End: Complemental strand, 33959167 - 33959044
Alignment:
| Q |
90 |
ccattcattgcatcatcagttgagaaatcaatcaaagccaccaatggttatgtttcacgaaaggaacataagtcaaattccaagaaagatgattctgaag |
189 |
Q |
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| T |
33959167 |
ccattcattgcatcatcagttgagaaatcaatcaaagcaaacaatggttatgtttcacgaaaggagcataagtcaaatacaaagcaagatgattctgaag |
33959068 |
T |
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| Q |
190 |
acattgatgaagccaattctgaag |
213 |
Q |
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| T |
33959067 |
acatagatgaagccaagtctgaag |
33959044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 396
Target Start/End: Original strand, 40668312 - 40668369
Alignment:
| Q |
339 |
gaaaatagtgaagtagttattgattggcctcgaagatatggtattgcacttgggattg |
396 |
Q |
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| T |
40668312 |
gaaaatagtgaagcagttcttgattggtctcaaagatatggtattgcacttgggattg |
40668369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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