View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_31 (Length: 385)
Name: NF10163A_low_31
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 6 - 372
Target Start/End: Complemental strand, 43037399 - 43037033
Alignment:
| Q |
6 |
atgtgtatcatgaattatttaaaatttaaatacaaccaaaagtttggtgaattatactctgtcctgcttatttgctcataaatcttgttatgtgtagact |
105 |
Q |
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| T |
43037399 |
atgtgtatcatgaattatttaaaatttaaatacaaccaaaagtttggtgaattatactctgtcctgcttatttgctcataaatcttgttatgtgtagact |
43037300 |
T |
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| Q |
106 |
gtaataatgtgtttattttcaaatgtaattttttgttttatataagagtgacggagtttaatttgaagcagtggattgtaatatttactatcagtgacag |
205 |
Q |
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| T |
43037299 |
ctaatagtgtgtttattttcaaatgtaattttttgttttatataagagtgacggagtttaatttgaaacagtggattgtaatatttactatcagtgacag |
43037200 |
T |
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| Q |
206 |
agtttaatttgaagcagtctgctaaaaatagatcagcgaggcatcctttagaacataaaagttatggttagaaagggtgtctttcaagtttgctttaggt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43037199 |
agtttaatttgaagcagtctgctaaaaatagatcagcgaggcatcctttagaacataaaagttatggttagaaagggtgtctttcaagtttgctttaggt |
43037100 |
T |
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| Q |
306 |
ctaaatagatgttaagcgccttgaattggcacaatagaaatagagaaaatggtacggacttccatat |
372 |
Q |
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| T |
43037099 |
ctaaatagatgttaagcgccttgaattggcacaatagaaatagagaaaatggtacggacttccatat |
43037033 |
T |
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