View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10163A_low_37 (Length: 368)

Name: NF10163A_low_37
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10163A_low_37
NF10163A_low_37
[»] chr1 (13 HSPs)
chr1 (23-351)||(13406693-13407006)
chr1 (207-351)||(19174827-19174971)
chr1 (23-140)||(19174678-19174795)
chr1 (46-135)||(13382567-13382656)
chr1 (306-351)||(13393776-13393821)
chr1 (306-351)||(13382346-13382391)
chr1 (29-74)||(13525790-13525835)
chr1 (29-74)||(20576292-20576337)
chr1 (56-131)||(13393940-13394015)
chr1 (29-68)||(19079102-19079141)
chr1 (29-68)||(19126990-19127029)
chr1 (46-135)||(13390955-13391043)
chr1 (30-74)||(13624844-13624888)
[»] scaffold0006 (1 HSPs)
scaffold0006 (29-74)||(123147-123192)
[»] chr3 (1 HSPs)
chr3 (52-98)||(6283058-6283104)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 23 - 351
Target Start/End: Complemental strand, 13407006 - 13406693
Alignment:
Q  23 gagtagggaatgctttgaaacagattatatctaaatatccttcaataaaaggcattaattttgatttaccccaagtggttcaagatgcaccgactcatcc 122  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13407006 gagtagggaatgctttgaaacagattatatctgaatatccttcaataaaaggcattaattttgatttaccccaagtggttcaagatgcaccaactcatcc 13406907  T
Q  123 tggtaaaatatatacatacataaacataagtgggtgtatgcgtgtgtgtatattcttctctttttatagtggctacgnnnnnnn-atgaattgaataatt 221  Q
     ||||| |||||||||||             | ||||    |||||| |||||||||||||||||||||| ||||||        |||||||||||||||    
T  13406906 aggtaatatatatacataa------------gagtgt----gtgtgtatatattcttctctttttatagttgctacgttttttttatgaattgaataatt 13406823  T
Q  222 aggaatcctagaaagaatggaatatcattgtttagcaaaaattaataattagaaaatgcacattaatctttgcttgcagggatagagcatgttgaaggaa 321  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  13406822 aggaatcctagaaagaatgggatatcattgtttagccaaaattaataattaggaaatccacattaatctttgcttgcagggatagagcatgttgaaggaa 13406723  T
Q  322 atatgtttgaaagtgttccaagtggtgatg 351  Q
    |||||||||||||||||||| |||||||||    
T  13406722 atatgtttgaaagtgttccaggtggtgatg 13406693  T

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Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 207 - 351
Target Start/End: Original strand, 19174827 - 19174971
Alignment:
Q  207 atgaattgaataattaggaatcctagaaagaatggaatatcattgtttagcaaaaattaataattagaaaatgcacattaatctttgcttgcagggatag 306  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19174827 atgaattgaataattaggaatcctagaaagaatgggatatcattgtttagccaaaattaataattagaaaatgcacattaatctttgcttgcagggatag 19174926  T
Q  307 agcatgttgaaggaaatatgtttgaaagtgttccaagtggtgatg 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  19174927 agcatgttgaaggaaatatgtttgaaagtgttccaagtggtgatg 19174971  T

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Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 19174678 - 19174795
Alignment:
Q  23 gagtagggaatgctttgaaacagattatatctaaatatccttcaataaaaggcattaattttgatttaccccaagtggttcaagatgcaccgactcatcc 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  19174678 gagtagggaatgctttgaaacagattatatctgaatatccttcaataaaaggcattaattttgatttacctcaagtggttcaagatgcaccaactcatcc 19174777  T
Q  123 tggtaaaatatatacata 140  Q
     ||||| |||||||||||    
T  19174778 aggtaatatatatacata 19174795  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 13382656 - 13382567
Alignment:
Q  46 attatatctaaatatccttcaataaaaggcattaattttgatttaccccaagtggttcaagatgcaccgactcatcctggtaaaatatat 135  Q
    ||||| ||| ||||||||||||| || || |||||||||||| | || ||||| |||||| |||||||  ||||||| ||||||||||||    
T  13382656 attatctctcaatatccttcaattaagggaattaattttgatatgccacaagttgttcaaaatgcaccttctcatccaggtaaaatatat 13382567  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 13393821 - 13393776
Alignment:
Q  306 gagcatgttgaaggaaatatgtttgaaagtgttccaagtggtgatg 351  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||    
T  13393821 gagcatgttggaggagatatgtttgaaagtgttccaagtggtgatg 13393776  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 13382391 - 13382346
Alignment:
Q  306 gagcatgttgaaggaaatatgtttgaaagtgttccaagtggtgatg 351  Q
    |||||||||| |||| ||||||||||||||||||||| ||||||||    
T  13382391 gagcatgttggaggagatatgtttgaaagtgttccaactggtgatg 13382346  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 13525835 - 13525790
Alignment:
Q  29 ggaatgctttgaaacagattatatctaaatatccttcaataaaagg 74  Q
    |||||||||||||||| ||||||||| ||||||||||||| |||||    
T  13525835 ggaatgctttgaaacaaattatatctgaatatccttcaattaaagg 13525790  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 20576337 - 20576292
Alignment:
Q  29 ggaatgctttgaaacagattatatctaaatatccttcaataaaagg 74  Q
    |||||||||||||||| ||||||||| ||||||||||||| |||||    
T  20576337 ggaatgctttgaaacaaattatatctgaatatccttcaattaaagg 20576292  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 131
Target Start/End: Complemental strand, 13394015 - 13393940
Alignment:
Q  56 aatatccttcaataaaaggcattaattttgatttaccccaagtggttcaagatgcaccgactcatcctggtaaaat 131  Q
    ||||||||||||| || ||  |||||||||| ||||| ||||  |||||||||||||| |||| ||| ||||||||    
T  13394015 aatatccttcaattaagggagttaattttgacttaccacaagctgttcaagatgcacctactcttccaggtaaaat 13393940  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 19079102 - 19079141
Alignment:
Q  29 ggaatgctttgaaacagattatatctaaatatccttcaat 68  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  19079102 ggaatgctttgaaacaaattatatctgaatatccttcaat 19079141  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 19126990 - 19127029
Alignment:
Q  29 ggaatgctttgaaacagattatatctaaatatccttcaat 68  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  19126990 ggaatgctttgaaacaaattatatctgaatatccttcaat 19127029  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 13391043 - 13390955
Alignment:
Q  46 attatatctaaatatccttcaataaaaggcattaattttgatttaccccaagtggttcaagatgcaccgactcatcctggtaaaatatat 135  Q
    ||||| ||| ||||||||||||| || ||  | |||||||| || || ||||  |||||||||||||| |||||||| ||||||||||||    
T  13391043 attatctctcaatatccttcaatcaacggagtaaattttgactt-ccacaagctgttcaagatgcacctactcatccaggtaaaatatat 13390955  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 13624888 - 13624844
Alignment:
Q  30 gaatgctttgaaacagattatatctaaatatccttcaataaaagg 74  Q
    |||||| |||||||| ||||||||| ||||||||||||| |||||    
T  13624888 gaatgcattgaaacaaattatatctgaatatccttcaattaaagg 13624844  T

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Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 123192 - 123147
Alignment:
Q  29 ggaatgctttgaaacagattatatctaaatatccttcaataaaagg 74  Q
    |||||||||||||||| ||||||||| ||||||||||||| |||||    
T  123192 ggaatgctttgaaacaaattatatctgaatatccttcaattaaagg 123147  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 6283104 - 6283058
Alignment:
Q  52 tctaaatatccttcaataaaaggcattaattttgatttaccccaagt 98  Q
    ||||| |||||||| ||||| ||||||||||||||||| ||||||||    
T  6283104 tctaagtatccttctataaagggcattaattttgatttgccccaagt 6283058  T

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