View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_40 (Length: 361)
Name: NF10163A_low_40
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 356
Target Start/End: Complemental strand, 7447498 - 7447137
Alignment:
| Q |
7 |
aaatatagcattgataatttgatgagcttaaaacacacgacacatgaatatatacatcttatagaaggtgacaaaaactaaagtagtggataccatacga |
106 |
Q |
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| T |
7447498 |
aaatatagcattgataatttgatgagcttaaaacacacgacacatgaatatatacatcttatagaaggtgacaaaaactaaagtagtggataccatacca |
7447399 |
T |
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| Q |
107 |
tttggagtcaaaatgaaaatcattatgttaatggatatatatgttcccaaatcatagttaaataaacacactagctaatagcaaacaattaatttacata |
206 |
Q |
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| T |
7447398 |
tttggagtcaaaatgaaaatcattatgttaatggatatatatgttcccaaatcatagttaaataaacacactagctagtagcaaacaattaatttacata |
7447299 |
T |
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| Q |
207 |
ttgggatcattcacattatgtacaaatgcaatattattattactaatatattcttaatt---------------agtacaaacttatccattccatgcca |
291 |
Q |
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| T |
7447298 |
ttgggatcattcacattatgtacaaatgcta---tattattactaatatattctttttttttttttcttctacatgtacaaacttatccattccatgcca |
7447202 |
T |
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| Q |
292 |
ttgtagtaacatgtttcattagccatgaaaaatacgtgatcatcatatccgttatcaacaccaaa |
356 |
Q |
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| T |
7447201 |
ttgtagtaacatgtttcattgggcatgaaaaatacgtcgtcatcatatccgttatcaacaccaaa |
7447137 |
T |
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