View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_46 (Length: 349)
Name: NF10163A_low_46
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 7 - 343
Target Start/End: Complemental strand, 43910399 - 43910064
Alignment:
| Q |
7 |
ctttatccctccttttcattgtaattaaggatccaaaggtctatgcttccacatgtttgttatttgatgagtgttatatattcatataatcatattcnnn |
106 |
Q |
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| T |
43910399 |
ctttatccctccttttcattgtaattaaggatccaaaggtctatgcttccacatgtttgttatttgatgagtgttatatattcatataatcatattcttt |
43910300 |
T |
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| Q |
107 |
nnnngagtgcagtcatgccacataatccagtcatcaaataatacaaagtgattgttcaatcaacgtgaggggaagaaaagtggagttgaataatctctac |
206 |
Q |
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| T |
43910299 |
ttttgtgtgctgtcatgc-acataatccagtcatcaaataatacaaagtgattgttcaatcaacttgaggggaagaaaagtggagttgaataatctctac |
43910201 |
T |
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| Q |
207 |
aaagtttcccttccacaactctcactttgctcatcnnnnnnncacaccaatgcaattgttgttcacttaactctttcattcttaaaacccttgacaccac |
306 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43910200 |
aaagtttcccttccacaactctcactttgctcatttttttttcacaccaatgcaattgttgttcacttaactctttcattcttaaaacccttgacaccac |
43910101 |
T |
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| Q |
307 |
ttttaggtctattaggcccattaatatttcaatctct |
343 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
43910100 |
ttttaggtctattaggcccattaatatttcaatctct |
43910064 |
T |
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