View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_47 (Length: 349)
Name: NF10163A_low_47
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF10163A_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 7 - 334
Target Start/End: Original strand, 29561221 - 29561548
Alignment:
Q |
7 |
agaactgatcagcattcattcaagcgattagttttctcagcatttgaagtaagatggcaatgcaaagggaaaactgctttgccattttgctgcctcatca |
106 |
Q |
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T |
29561221 |
agaactaatcagcgttcattcaagtgataagttttctcagcatttgaagaaagatggcaatgcaaagggaaaactgctttgccattctgctgcctcgtca |
29561320 |
T |
 |
Q |
107 |
acaacgacgagttgtttccaatgtcttggaacggcattcgctttggaaccagtaatccacctctagcagcatgnnnnnnnctttctccattccttaaaac |
206 |
Q |
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T |
29561321 |
acaatgaagagttgttcccaatgtcttggaacggcattcgttttggaactagtagtccacctctagcagcatgtgtttttctttctccattccttaaaac |
29561420 |
T |
 |
Q |
207 |
ctcactgtgttttctgttttctgtaacattactacttttctcctttgagctgcaaactactattcgcttctcaaactctttctgtgtatccaatggaacc |
306 |
Q |
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T |
29561421 |
ctcaccgtgttttctgttttctgtaacattgctacttttttcctttgagctgcaaattactattcgcttctcaaactctttctgtgtatccaatggaacc |
29561520 |
T |
 |
Q |
307 |
ggtggacatttcgcccccttaactacat |
334 |
Q |
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T |
29561521 |
ggtggacatttcgtccccttaactacat |
29561548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 29557421 - 29557541
Alignment:
Q |
7 |
agaactgatcagcattcattcaagcgattagttttctcagcatttgaagtaagatggcaatgcaaagggaaaactgctttgccattttgctgcctcatca |
106 |
Q |
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|||||| ||||||||||||||||| | | ||||| |||||||||||||| || |||||||||||||| |||||||||||||||| | || ||| |||||| |
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T |
29557421 |
agaacttatcagcattcattcaagtgctaagttt-ctcagcatttgaagaaatatggcaatgcaaagagaaaactgctttgccactctg-tgcttcatca |
29557518 |
T |
 |
Q |
107 |
acaacgacgagttgtttccaatg |
129 |
Q |
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|||| |||||||| ||||||||| |
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T |
29557519 |
acaatgacgagttatttccaatg |
29557541 |
T |
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