View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10163A_low_47 (Length: 349)

Name: NF10163A_low_47
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10163A_low_47
NF10163A_low_47
[»] chr4 (2 HSPs)
chr4 (7-334)||(29561221-29561548)
chr4 (7-129)||(29557421-29557541)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 7 - 334
Target Start/End: Original strand, 29561221 - 29561548
Alignment:
7 agaactgatcagcattcattcaagcgattagttttctcagcatttgaagtaagatggcaatgcaaagggaaaactgctttgccattttgctgcctcatca 106  Q
    |||||| |||||| |||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||    
29561221 agaactaatcagcgttcattcaagtgataagttttctcagcatttgaagaaagatggcaatgcaaagggaaaactgctttgccattctgctgcctcgtca 29561320  T
107 acaacgacgagttgtttccaatgtcttggaacggcattcgctttggaaccagtaatccacctctagcagcatgnnnnnnnctttctccattccttaaaac 206  Q
    |||| || |||||||| ||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||       ||||||||||||||||||||    
29561321 acaatgaagagttgttcccaatgtcttggaacggcattcgttttggaactagtagtccacctctagcagcatgtgtttttctttctccattccttaaaac 29561420  T
207 ctcactgtgttttctgttttctgtaacattactacttttctcctttgagctgcaaactactattcgcttctcaaactctttctgtgtatccaatggaacc 306  Q
    ||||| |||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
29561421 ctcaccgtgttttctgttttctgtaacattgctacttttttcctttgagctgcaaattactattcgcttctcaaactctttctgtgtatccaatggaacc 29561520  T
307 ggtggacatttcgcccccttaactacat 334  Q
    ||||||||||||| ||||||||||||||    
29561521 ggtggacatttcgtccccttaactacat 29561548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 29557421 - 29557541
Alignment:
7 agaactgatcagcattcattcaagcgattagttttctcagcatttgaagtaagatggcaatgcaaagggaaaactgctttgccattttgctgcctcatca 106  Q
    |||||| ||||||||||||||||| | | ||||| |||||||||||||| || |||||||||||||| |||||||||||||||| | || ||| ||||||    
29557421 agaacttatcagcattcattcaagtgctaagttt-ctcagcatttgaagaaatatggcaatgcaaagagaaaactgctttgccactctg-tgcttcatca 29557518  T
107 acaacgacgagttgtttccaatg 129  Q
    |||| |||||||| |||||||||    
29557519 acaatgacgagttatttccaatg 29557541  T

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