View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_48 (Length: 347)
Name: NF10163A_low_48
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 34958932 - 34959277
Alignment:
| Q |
1 |
gtgttcgtgtatgagtttgtgtttcatagtatcaccatattccgaaagcaactcacattccaatatttcatatggttaaagtcattgattcaggattgta |
100 |
Q |
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| T |
34958932 |
gtgttcgtgtatgagtttgtgtttcatagtattaccatattccaaaagcaacttacatttcaaaatttcatatggttaa-gtcattgattcaggattgta |
34959030 |
T |
|
| Q |
101 |
ta-aaaaagttcatgccatattaacaagtgcgcctcatcaac----aatagtacatatttgttgtaacggtgaaacaagtctaagatccagcctcatgtg |
195 |
Q |
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| T |
34959031 |
cacaaaaagtgcaggacatattaacaagtgcgcctcatcaacgtacaatagtacatatttgttgtaacggtgaaacaagtctaagatccagcctcatgtg |
34959130 |
T |
|
| Q |
196 |
cacattgaaactatattaatcatctctcaaagttcaaagaaattggcttccaaaaatgcttttcaaaatctggaaaacttgacctttttggcatatgatg |
295 |
Q |
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| T |
34959131 |
cacattgaaactatattaatcatctctcaaagttcttagaaattggcttcaaaaaatgcttttcaaaatctggaaaacttgacctttttggcatatgatg |
34959230 |
T |
|
| Q |
296 |
catgcattttattttaaagatatgattcatttgcatttcactcttgt |
342 |
Q |
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| T |
34959231 |
catgcattttattttaaagatatgattcatttgcatttcactcttgt |
34959277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 3921652 - 3921320
Alignment:
| Q |
1 |
gtgttcgtgtatgagtttgtgtttcatagtatcaccatattccgaaagcaactcacattccaatatttcatatggttaaagtcattgattcaggattgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | |||||||||||||||||||||||||| ||||||||| |
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| T |
3921652 |
gtgttcgtgtatgagtttgtgtttcatagtatcaccatattccgaaagtaattcacattcggaaatttcatatggttaaagtcattgattgaggattgta |
3921553 |
T |
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| Q |
101 |
ta-aaaaagttcatgccatattaacaagtgcgcctcatcaacaatagtacatatttgttgtaacggtgaaacaagtctaagatccagcctcatgtgcaca |
199 |
Q |
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| T |
3921552 |
cacaaaaagtgtaggacatattaacaagt----------aacaatagtacatatttgttgtaactgtgaaacaagtctaagatccagcctcatgtgcaca |
3921463 |
T |
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| Q |
200 |
ttgaaactatattaatcatctctcaaagttcaaagaaattggcttccaaaaatgcttttcaaaatctggaaaacttgacctttttggcatatgatgcatg |
299 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3921462 |
ttgaacctatattaatcatctctcacagttcaaagaaattggtttcagaaaatgcttttcaaaatctggaaagcttgacctttttggcatatgatgcatg |
3921363 |
T |
|
| Q |
300 |
cattttattttaaagatatgattcatttgcatttcactcttgt |
342 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3921362 |
cattttattttaaagatatgattcatctgcatttcactcttgt |
3921320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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