View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10163A_low_5 (Length: 567)
Name: NF10163A_low_5
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 25 - 529
Target Start/End: Original strand, 39231345 - 39231848
Alignment:
| Q |
25 |
cccgggagaatgtcggcgatatttacagccggggtgttggctagaagtaagaaaggtggtaacccaaagactcatgtgtttttgcatgatttttctggtg |
124 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39231345 |
cccgggagaatgtcggcgatatttaccgccggggtgttggctagaagtaagaaaggtggtaacccaaagactcatgtgtttttgcatgatttttctggtg |
39231444 |
T |
|
| Q |
125 |
aagttgaacaagtttgtgggaatgagtttttgtgtaaagagaatttgttggaagcaagtgagagtatggggcattatgttttggaaaggatgaatgagag |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39231445 |
aagttgaacaagtttgtgggaatgagtttttgtgtaaagagaatttgttggaagcaagtgagagtatggggcattatgttttggaaaggatgaatgagag |
39231544 |
T |
|
| Q |
225 |
cagtgttcagtattgtaaagggtctgcttcagccacataatgcatctatgaaatcatagaaatcgcaatgacaccatgattttgtgaaggtccaaaatgt |
324 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
39231545 |
cagtgttcagtattgtaaagggtcttcttcatccacctaatgcatctatgaaatcatagaaatcgcgatgacaccatgattttgtcgaggtccaaaatgt |
39231644 |
T |
|
| Q |
325 |
agtttttatcaaaatcacagtggctcgacgtgactatgcaaaagacaattcaaacatgcatttaattagttgctccttctcttccatttaaatttctcat |
424 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39231645 |
agtttttatcaaaatcacggtggctcgacgtgactatacaaaagacaattcaaacatgca-ttaattagttgctccttctcttccatttaaatttctcat |
39231743 |
T |
|
| Q |
425 |
aaatgtcttagtcacacagttgattcatctaccatcagttattttacccttatggtgttttgggtatttatcatcatctattttactctccatttatgtt |
524 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39231744 |
aaatgtcttagtcacacaattgattcatctaccatcagttattttacccttatggtgttttgggtatttatcatcatccattttactctccatttatgtt |
39231843 |
T |
|
| Q |
525 |
ttgtt |
529 |
Q |
| |
|
||||| |
|
|
| T |
39231844 |
ttgtt |
39231848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University