View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_50 (Length: 340)
Name: NF10163A_low_50
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 2 - 334
Target Start/End: Complemental strand, 40821849 - 40821517
Alignment:
| Q |
2 |
aaaagaaaagaaaagtgataacctaaataagtagtgaaatgactcaaacaacgttaagtttttaaaatgatagagattttaagaaccatgatttacttgt |
101 |
Q |
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| T |
40821849 |
aaaagaaaagaaaagtgataacctaaataagtagtgaaatgactcaaacaacattaagttcttaaaatgatagagattttcagaaccatgatttacttgt |
40821750 |
T |
|
| Q |
102 |
ggttttttagactcttgactttaaggaaatctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatggg |
201 |
Q |
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| T |
40821749 |
gattttttagactcttgactttaaggaaatctcaaatcattattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatggg |
40821650 |
T |
|
| Q |
202 |
tgtttcagtcgttgttcaaatatgctctctgttctgttcattttgttttgttatttgttacaagttagtattgccataaccaacatcacatcatcccaat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40821649 |
tgtttcagtcgttgttcaaatatgctctctgttctgttcattttgttttgcactttgttacaagttagtattgccataaccaacatcacatcatcccagt |
40821550 |
T |
|
| Q |
302 |
acataaaggacaccgaaactcttatctccaaag |
334 |
Q |
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| T |
40821549 |
acataaaggacactgaaactcttatctccaaag |
40821517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 34 - 334
Target Start/End: Original strand, 20292021 - 20292311
Alignment:
| Q |
34 |
agtgaaatgactcaaacaacgttaagtttttaaaatgatagagattttaagaaccatgatttacttgtggttttttagactcttgactttaag---gaaa |
130 |
Q |
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| T |
20292021 |
agtgaaatgtctcaaagaacattaattttttgaaataata----tttttagaactttgatttacctgtgattttttagactcttgacgttaagaaggaaa |
20292116 |
T |
|
| Q |
131 |
tctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaatatgctctc |
230 |
Q |
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| T |
20292117 |
tctcaaatcattattaataagaaagagtggtt-tttttgtatcatagtctacttgttgatcatataatgggt--ttcagt------tcaaatatgctctc |
20292207 |
T |
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| Q |
231 |
tgttctgttcattttgttttgttatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctcc |
330 |
Q |
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| T |
20292208 |
tgttctgttcattttgttttgctatttgttacaagttaatattgccataaacaccatcacatcatcccaattcatcaaggacgctgaaactcttatctcc |
20292307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 323
Target Start/End: Original strand, 20301393 - 20301502
Alignment:
| Q |
214 |
tgttcaaatatgctctctgttctgttcattttgttttgttatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggaca |
313 |
Q |
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||||||||| || ||| |||| |||||||| |||||| |||||||||| |||||||| | ||| || ||||||||||||||||| ||| |||||| |
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| T |
20301393 |
tgttcaaatctgttctttgttttgttcattctgttttcctatttgttacgtgttagtatcggtatagacaccatcacatcatcccaattcatcaaggacc |
20301492 |
T |
|
| Q |
314 |
ccgaaactct |
323 |
Q |
| |
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| T |
20301493 |
ctgaaactct |
20301502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 334
Target Start/End: Complemental strand, 20064991 - 20064893
Alignment:
| Q |
236 |
tgttcattttgttttgttatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctccaaag |
334 |
Q |
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|||||||| |||||| ||||||||||| |||||||| | ||| || ||||||||||||||||| ||| |||||| | ||||| || ||||||||| |
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| T |
20064991 |
tgttcattgtgtttttgtatttgttacatgttagtatcggtatagacaccatcacatcatcccaattcatcaaggaccctgaaacactactctccaaag |
20064893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 20092660 - 20092587
Alignment:
| Q |
146 |
aataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaa |
221 |
Q |
| |
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||||||||||||||||||||| ||||||||| | | | | ||||||| ||||| ||||||||| |||||||||| |
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| T |
20092660 |
aataagaaagagtggttgtttatgtatcatacttttagtattgatcacataat--gtgtttcaggtgttgttcaaa |
20092587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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